| Definition | Kosmotoga olearia TBF 19.5.1, complete genome. |
|---|---|
| Accession | NC_012785 |
| Length | 2,302,126 |
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The map label for this gene is 239616490
Identifier: 239616490
GI number: 239616490
Start: 94791
End: 95756
Strand: Direct
Name: 239616490
Synonym: Kole_0080
Alternate gene names: NA
Gene position: 94791-95756 (Clockwise)
Preceding gene: 239616487
Following gene: 239616491
Centisome position: 4.12
GC content: 44.31
Gene sequence:
>966_bases ATGAAAAGGTTTATTACCGTCGTGGTCATCCTTCTTTCAATTGTCGGTTTTGGTGTTGTCAAGATAGGTGTTACTCAGAT TGTCGATCATCCAGCACTCGACGCAGTTGTAAAGGGTATGATAAGTTTTCTGGAAGAATCGGGTTTTGAAGTTGGCAAGG ACATTGTATTGGATAGGCAAAGTGCTCAGGGAAGTGTGCAGAATGCGGTTGCAATAGCCAAGAAGTTTGCTTCCGAGGAC ATCGATATTGTTGTTGCCGTGACAACCCCCTCGGCTCAAGCATGTGCGCAGGCTATAACTGACAGGCCGGTTGTCTTTTC AGCGGTAACCGATCCTGTTGGAGCAGGATTGATCAAACAATTTGGTAAGAATGAAGGGAACATCGTTGGAATCTCTGATA TGGTACCAGTTGCAACGCATTTGAAGCTCATAAGAATGGTGTTTCCCGAGGCTAAGAAGGTAGGGGTGATCTACAATCCG GGAGAAGCCAATTCTGTGACTCTGACAGAGATTGCAAAATCAGCTGCCCCAAGTCTTGGTTTTACCATTGTCGATATTCC CGGTACAACCCCAAATGAAATGATAACAGCCCTTAACAGTATTGGACCAAGCGTTGATGTTATTTACGTTGGAACAGATA ATACCGTAGCATCCTCAATTCAAGCAATTGGATCCGCTGCTATCAAGCTTAAAAAGCCGATAGTTGCTGCGGACATTTCC ATAGCAAGAGGAGGAGGAATCATAGGATTTGGATTTAACTATTTTCAGGTAGGAATTGAAACCGGGCGTATAGTTTTGGC TTTGCTGAAAGGAGCAAAGCCGAGCGAGATTGAATCAAGGATTCTCGGGCCTGATTCTTTGGAGTTGTTTGTGAATTTGG ATCTTGCGAAAGCACTTGGAGTGGAGATACCAAAAGAACTTGTGGAGAGAGCCGATATAGTTGTTGAAAATGGTGTTGAG AGGTGA
Upstream 100 bases:
>100_bases ATACCACTTGCTACATAATTGGGGAACTCATAAGGTAGAAGAAGAGGGCATCTGAAAAAGATGCCCTCTTTTTTTATATA ACTTTACAGGGGGTGTTTGT
Downstream 100 bases:
>100_bases CAAATGTGATCTCGATTTTTGAGCAGGGGTTGCTCTTATCTATAGCCGCCATGGGTGTTTACATATCTTTTCGCATTGTT GATCTTCCTGATTTGACACC
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein; ABC Transporter; ABC Transporter Permease; ABC Transporter Periplasmic Protein; ABC-Type Transporter Periplasmic Component; Permease; Permease Protein; Exported Protein; ABC-Type Transport Protein Periplasmic C; ABC Transporter Permease Protein; ABC-Type Transporter
Number of amino acids: Translated: 321; Mature: 321
Protein sequence:
>321_residues MKRFITVVVILLSIVGFGVVKIGVTQIVDHPALDAVVKGMISFLEESGFEVGKDIVLDRQSAQGSVQNAVAIAKKFASED IDIVVAVTTPSAQACAQAITDRPVVFSAVTDPVGAGLIKQFGKNEGNIVGISDMVPVATHLKLIRMVFPEAKKVGVIYNP GEANSVTLTEIAKSAAPSLGFTIVDIPGTTPNEMITALNSIGPSVDVIYVGTDNTVASSIQAIGSAAIKLKKPIVAADIS IARGGGIIGFGFNYFQVGIETGRIVLALLKGAKPSEIESRILGPDSLELFVNLDLAKALGVEIPKELVERADIVVENGVE R
Sequences:
>Translated_321_residues MKRFITVVVILLSIVGFGVVKIGVTQIVDHPALDAVVKGMISFLEESGFEVGKDIVLDRQSAQGSVQNAVAIAKKFASED IDIVVAVTTPSAQACAQAITDRPVVFSAVTDPVGAGLIKQFGKNEGNIVGISDMVPVATHLKLIRMVFPEAKKVGVIYNP GEANSVTLTEIAKSAAPSLGFTIVDIPGTTPNEMITALNSIGPSVDVIYVGTDNTVASSIQAIGSAAIKLKKPIVAADIS IARGGGIIGFGFNYFQVGIETGRIVLALLKGAKPSEIESRILGPDSLELFVNLDLAKALGVEIPKELVERADIVVENGVE R >Mature_321_residues MKRFITVVVILLSIVGFGVVKIGVTQIVDHPALDAVVKGMISFLEESGFEVGKDIVLDRQSAQGSVQNAVAIAKKFASED IDIVVAVTTPSAQACAQAITDRPVVFSAVTDPVGAGLIKQFGKNEGNIVGISDMVPVATHLKLIRMVFPEAKKVGVIYNP GEANSVTLTEIAKSAAPSLGFTIVDIPGTTPNEMITALNSIGPSVDVIYVGTDNTVASSIQAIGSAAIKLKKPIVAADIS IARGGGIIGFGFNYFQVGIETGRIVLALLKGAKPSEIESRILGPDSLELFVNLDLAKALGVEIPKELVERADIVVENGVE R
Specific function: Unknown
COG id: COG2984
COG function: function code R; ABC-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33556; Mature: 33556
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRFITVVVILLSIVGFGVVKIGVTQIVDHPALDAVVKGMISFLEESGFEVGKDIVLDRQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHEEECC SAQGSVQNAVAIAKKFASEDIDIVVAVTTPSAQACAQAITDRPVVFSAVTDPVGAGLIKQ CCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHHH FGKNEGNIVGISDMVPVATHLKLIRMVFPEAKKVGVIYNPGEANSVTLTEIAKSAAPSLG HCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEHHHHHHHHCCCCC FTIVDIPGTTPNEMITALNSIGPSVDVIYVGTDNTVASSIQAIGSAAIKLKKPIVAADIS EEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECEE IARGGGIIGFGFNYFQVGIETGRIVLALLKGAKPSEIESRILGPDSLELFVNLDLAKALG EECCCCEEEECCEEEEEECCCCHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEECHHHHHC VEIPKELVERADIVVENGVER CCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKRFITVVVILLSIVGFGVVKIGVTQIVDHPALDAVVKGMISFLEESGFEVGKDIVLDRQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHEEECC SAQGSVQNAVAIAKKFASEDIDIVVAVTTPSAQACAQAITDRPVVFSAVTDPVGAGLIKQ CCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHHH FGKNEGNIVGISDMVPVATHLKLIRMVFPEAKKVGVIYNPGEANSVTLTEIAKSAAPSLG HCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEHHHHHHHHCCCCC FTIVDIPGTTPNEMITALNSIGPSVDVIYVGTDNTVASSIQAIGSAAIKLKKPIVAADIS EEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECEE IARGGGIIGFGFNYFQVGIETGRIVLALLKGAKPSEIESRILGPDSLELFVNLDLAKALG EECCCCEEEECCEEEEEECCCCHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEECHHHHHC VEIPKELVERADIVVENGVER CCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA