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The map label for this gene is deoB

Identifier: 239616456

GI number: 239616456

Start: 51399

End: 52568

Strand: Direct

Name: deoB

Synonym: Kole_0045

Alternate gene names: 239616456

Gene position: 51399-52568 (Clockwise)

Preceding gene: 239616455

Following gene: 239616459

Centisome position: 2.23

GC content: 46.67

Gene sequence:

>1170_bases
ATGAGAGCAATAATAATTGTTCTTGACAGTGCAGGTATTGGTGAAATGCCTGATGCTGAAAAATACGGAGACAAAGGCTC
AAATACCTTTGGCAACACAGCCAAAGCGGTTGGCGGGCTTCACATGCCCAACTCACAAAGGCTTGGCCTCGGGAATCTAA
CGGATATTCTCGGCGTACCACCAACAGACCACGCACTTGGAGCTTACGGTAGAATGCTTGAGAAGAGCCCCGGGAAGGAT
ACAACCACGGGACACTGGGAATTCATGGGTATCATTTTAGAAAAGCCCTTTGACATGTTTCCAAATGGATTCCCGCCTGA
AATTATAGAGCCCTTCGAAAAAGAGACTGGAAGAAAGGTCATAGGTAACAAGCCCGCTTCGGGGACAGAGATAATCAAGG
AACTCGGTCGGGAACACGAGAAAACCGGAGCGCTCATCGTTTACACATCCGCCGACAGTGTTTTCCAGATAGCCGCTCAT
GAGGAAATTGTTCCTGTTCCTGAGCTCTACAAATACTGTGAAATTGCGAGAAAGATCTTGAATGAGAGTGGATACAAGGT
CGCCCGTGTCATTGCGAGACCTTTCATAGGTGAGTGGCCAAATTATACGAGGACTCCAAGAAGGCACGACTATTCCCTCC
CACCTGAAGGAAAGATCGCACTCGAATATCTCGTTGAAAACGGGGTTCCCGTTTACGCGGTGGGAAAAATAAACGACATC
TATGATGGCCACGGAATTACCGAATATGTTAAGACAAAGGATAACATGGACGGAGTGGACAAAACCCTCGATTACATAAG
GAAAGTTGATAAAGGCCTCATATTCACTAACCTGGTTGACTTTGATATGAAATACGGCCACAGAAACAACCCTGAAGGCT
ATGCTAAAGCACTGGAAGAATTCGATGCGCGGCTTCCAGAAATTATTGGAACGATGAGGCCAGATGACGTTCTCTTCATC
ACAGCTGATCATGGCTGTGACCCAACGACCCCTTCCACGGATCATTCGAGAGAAAAGGTTCCTCTACTAGTCTATGGAAG
GCATGTGAAAGAAAATGTATTCCTTGGAGAGCGCGAAACCTTCGCGGACCTTGGACAAACCATTCTCGATCTCTTCGGAG
TCGAGCCAATGGAAAACGGTACCAGTTTCAAAAAAGAAATTCTCGATTGA

Upstream 100 bases:

>100_bases
TACATTCTAAAAGCTTGTAACACCAGAGACCTTTCTGAATTCCGTTTTGGAAGGTTGCTGGCTATTCCATCAGAATTTTA
TTCACGAAGGAGTTGATTAA

Downstream 100 bases:

>100_bases
CCTTTTTCTTGCTTCACGTTATAATATCCATCGTGTGGGGTCGTAGCGCAGTCGGGAGCGCGTCGCCTTCGCAAGGCGAA
AGTCGTGGGTTCGAATCCCA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MRAIIIVLDSAGIGEMPDAEKYGDKGSNTFGNTAKAVGGLHMPNSQRLGLGNLTDILGVPPTDHALGAYGRMLEKSPGKD
TTTGHWEFMGIILEKPFDMFPNGFPPEIIEPFEKETGRKVIGNKPASGTEIIKELGREHEKTGALIVYTSADSVFQIAAH
EEIVPVPELYKYCEIARKILNESGYKVARVIARPFIGEWPNYTRTPRRHDYSLPPEGKIALEYLVENGVPVYAVGKINDI
YDGHGITEYVKTKDNMDGVDKTLDYIRKVDKGLIFTNLVDFDMKYGHRNNPEGYAKALEEFDARLPEIIGTMRPDDVLFI
TADHGCDPTTPSTDHSREKVPLLVYGRHVKENVFLGERETFADLGQTILDLFGVEPMENGTSFKKEILD

Sequences:

>Translated_389_residues
MRAIIIVLDSAGIGEMPDAEKYGDKGSNTFGNTAKAVGGLHMPNSQRLGLGNLTDILGVPPTDHALGAYGRMLEKSPGKD
TTTGHWEFMGIILEKPFDMFPNGFPPEIIEPFEKETGRKVIGNKPASGTEIIKELGREHEKTGALIVYTSADSVFQIAAH
EEIVPVPELYKYCEIARKILNESGYKVARVIARPFIGEWPNYTRTPRRHDYSLPPEGKIALEYLVENGVPVYAVGKINDI
YDGHGITEYVKTKDNMDGVDKTLDYIRKVDKGLIFTNLVDFDMKYGHRNNPEGYAKALEEFDARLPEIIGTMRPDDVLFI
TADHGCDPTTPSTDHSREKVPLLVYGRHVKENVFLGERETFADLGQTILDLFGVEPMENGTSFKKEILD
>Mature_389_residues
MRAIIIVLDSAGIGEMPDAEKYGDKGSNTFGNTAKAVGGLHMPNSQRLGLGNLTDILGVPPTDHALGAYGRMLEKSPGKD
TTTGHWEFMGIILEKPFDMFPNGFPPEIIEPFEKETGRKVIGNKPASGTEIIKELGREHEKTGALIVYTSADSVFQIAAH
EEIVPVPELYKYCEIARKILNESGYKVARVIARPFIGEWPNYTRTPRRHDYSLPPEGKIALEYLVENGVPVYAVGKINDI
YDGHGITEYVKTKDNMDGVDKTLDYIRKVDKGLIFTNLVDFDMKYGHRNNPEGYAKALEEFDARLPEIIGTMRPDDVLFI
TADHGCDPTTPSTDHSREKVPLLVYGRHVKENVFLGERETFADLGQTILDLFGVEPMENGTSFKKEILD

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=405, Percent_Identity=45.679012345679, Blast_Score=318, Evalue=5e-88,
Organism=Escherichia coli, GI1789781, Length=407, Percent_Identity=28.2555282555283, Blast_Score=125, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_KOSOT (C5CHD5)

Other databases:

- EMBL:   CP001634
- RefSeq:   YP_002939778.1
- ProteinModelPortal:   C5CHD5
- GeneID:   7968873
- GenomeReviews:   CP001634_GR
- KEGG:   kol:Kole_0045
- ProtClustDB:   PRK05362
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 43305; Mature: 43305

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAIIIVLDSAGIGEMPDAEKYGDKGSNTFGNTAKAVGGLHMPNSQRLGLGNLTDILGVP
CEEEEEEEECCCCCCCCCHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHCCC
PTDHALGAYGRMLEKSPGKDTTTGHWEFMGIILEKPFDMFPNGFPPEIIEPFEKETGRKV
CCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHCCHHHCCCCCCHHHHHHHHHHCCCEE
IGNKPASGTEIIKELGREHEKTGALIVYTSADSVFQIAAHEEIVPVPELYKYCEIARKIL
CCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
NESGYKVARVIARPFIGEWPNYTRTPRRHDYSLPPEGKIALEYLVENGVPVYAVGKINDI
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHEEHHHCCCCEEEECCCCCC
YDGHGITEYVKTKDNMDGVDKTLDYIRKVDKGLIFTNLVDFDMKYGHRNNPEGYAKALEE
CCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCCHHHHHHHHH
FDARLPEIIGTMRPDDVLFITADHGCDPTTPSTDHSREKVPLLVYGRHVKENVFLGERET
HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCHHHCCEECCCHHH
FADLGQTILDLFGVEPMENGTSFKKEILD
HHHHHHHHHHHHCCCCCCCCCHHHHHHCC
>Mature Secondary Structure
MRAIIIVLDSAGIGEMPDAEKYGDKGSNTFGNTAKAVGGLHMPNSQRLGLGNLTDILGVP
CEEEEEEEECCCCCCCCCHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHCCC
PTDHALGAYGRMLEKSPGKDTTTGHWEFMGIILEKPFDMFPNGFPPEIIEPFEKETGRKV
CCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHCCHHHCCCCCCHHHHHHHHHHCCCEE
IGNKPASGTEIIKELGREHEKTGALIVYTSADSVFQIAAHEEIVPVPELYKYCEIARKIL
CCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
NESGYKVARVIARPFIGEWPNYTRTPRRHDYSLPPEGKIALEYLVENGVPVYAVGKINDI
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHEEHHHCCCCEEEECCCCCC
YDGHGITEYVKTKDNMDGVDKTLDYIRKVDKGLIFTNLVDFDMKYGHRNNPEGYAKALEE
CCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCCHHHHHHHHH
FDARLPEIIGTMRPDDVLFITADHGCDPTTPSTDHSREKVPLLVYGRHVKENVFLGERET
HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCHHHCCEECCCHHH
FADLGQTILDLFGVEPMENGTSFKKEILD
HHHHHHHHHHHHCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA