| Definition | Eubacterium rectale ATCC 33656, complete genome. |
|---|---|
| Accession | NC_012781 |
| Length | 3,449,685 |
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The map label for this gene is nodI [H]
Identifier: 238925386
GI number: 238925386
Start: 2914598
End: 2915524
Strand: Reverse
Name: nodI [H]
Synonym: EUBREC_3041
Alternate gene names: 238925386
Gene position: 2915524-2914598 (Counterclockwise)
Preceding gene: 238925387
Following gene: 238925385
Centisome position: 84.52
GC content: 37.22
Gene sequence:
>927_bases ATGAAAGCAAATAATTTAATTATTGATTCAATCAGTAAAACATATAAAAAAGGGAAGATAAGAGCCAATGATAATATTTC ATTAGAACTGTATCCTTCTGAAATCACTGCACTTATCGGACATAATGGCGCGGGGAAAACGACTCTGCTGAATCAGATTA TAGGTAATGCCAAACCTGACAGTGGAGATATTACTTATAAGGGAATATCATTGGTAAAAAATTCAAAAGTAGCCAGAGAA CTGGTATCCATAATGCCCCAGTTTCATGCTCCGCTTGAAGGAGTAACACTAAGGCAGTCCATAGAATCTATTTTGAGAAT CAAAGGAGTATCTGAAAAGCAGGTGCATTTATGCACAAAACAAGTGTTAAAGGATTTGGATATTGAGCAGTGGGCTGACC AGGCAGGAAATAAATTATCCGGTGGTTTACAGAGACTGACCTCTTTTGCAATGGCAGTGGCATACCCATCAGACATAATT CTGCTTGACGAGCCCACAAATGATGTTGATCCAATAAGACGTAAGTTGACATGGCAGTATATGAGAAAACTAGCAAAAGA GGGGCATATGATTTTTGTTGTCACCCATAATCTACTTGAAGTTGAACAGTATACAGACAGATATATTTTACTGAATAAAG GTCGTATAATTCGTGACGATTCTACGGCTGTTATTAGTAATGACTACGTTTCAAATGTAATGATAGTATCCCTGCATGAT ACGGACGAGTTGCACGATCTACCGGAAGCCGAAACCAGTGAATATAAAGAAGATGAAATGCAGTTGGTTCTTACCTTGTC TGAAAATCAGGTTTCAAATGCTGTTAATTGGCTGATGGAGCTTATAAGACAGGGAAAAGTTTTGAATTATAAGTTTACAT CTGCAACATTGGATATGCAATATGGAGGTATGATAGATGGAGAATAA
Upstream 100 bases:
>100_bases TTGTCGAGATAGCAGTAGTTGTCTTTTGGGGTATCCCGTTTGTATTGAGCATATACACTAACCTGTTCGTTTAATTTTAA GAAGAAAGAAAAGGTAATTT
Downstream 100 bases:
>100_bases AGAAACATTATCAAACCCGCAGGCATCTTATTTGACAAAACTTAAAGGAGTGATATTTTGGAGCTTGATAAGACACAAAT ATCTGGTGCCGGTATTCAGT
Product: ABC transport ATP-binding subunit
Products: NA
Alternate protein names: Nodulation ATP-binding protein I [H]
Number of amino acids: Translated: 308; Mature: 308
Protein sequence:
>308_residues MKANNLIIDSISKTYKKGKIRANDNISLELYPSEITALIGHNGAGKTTLLNQIIGNAKPDSGDITYKGISLVKNSKVARE LVSIMPQFHAPLEGVTLRQSIESILRIKGVSEKQVHLCTKQVLKDLDIEQWADQAGNKLSGGLQRLTSFAMAVAYPSDII LLDEPTNDVDPIRRKLTWQYMRKLAKEGHMIFVVTHNLLEVEQYTDRYILLNKGRIIRDDSTAVISNDYVSNVMIVSLHD TDELHDLPEAETSEYKEDEMQLVLTLSENQVSNAVNWLMELIRQGKVLNYKFTSATLDMQYGGMIDGE
Sequences:
>Translated_308_residues MKANNLIIDSISKTYKKGKIRANDNISLELYPSEITALIGHNGAGKTTLLNQIIGNAKPDSGDITYKGISLVKNSKVARE LVSIMPQFHAPLEGVTLRQSIESILRIKGVSEKQVHLCTKQVLKDLDIEQWADQAGNKLSGGLQRLTSFAMAVAYPSDII LLDEPTNDVDPIRRKLTWQYMRKLAKEGHMIFVVTHNLLEVEQYTDRYILLNKGRIIRDDSTAVISNDYVSNVMIVSLHD TDELHDLPEAETSEYKEDEMQLVLTLSENQVSNAVNWLMELIRQGKVLNYKFTSATLDMQYGGMIDGE >Mature_308_residues MKANNLIIDSISKTYKKGKIRANDNISLELYPSEITALIGHNGAGKTTLLNQIIGNAKPDSGDITYKGISLVKNSKVARE LVSIMPQFHAPLEGVTLRQSIESILRIKGVSEKQVHLCTKQVLKDLDIEQWADQAGNKLSGGLQRLTSFAMAVAYPSDII LLDEPTNDVDPIRRKLTWQYMRKLAKEGHMIFVVTHNLLEVEQYTDRYILLNKGRIIRDDSTAVISNDYVSNVMIVSLHD TDELHDLPEAETSEYKEDEMQLVLTLSENQVSNAVNWLMELIRQGKVLNYKFTSATLDMQYGGMIDGE
Specific function: Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi
COG id: COG1131
COG function: function code V; ABC-type multidrug transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI31657092, Length=216, Percent_Identity=35.1851851851852, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI27436953, Length=213, Percent_Identity=30.5164319248826, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI21536376, Length=221, Percent_Identity=31.2217194570136, Blast_Score=118, Evalue=8e-27, Organism=Homo sapiens, GI27262624, Length=213, Percent_Identity=33.8028169014084, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI27262626, Length=213, Percent_Identity=33.8028169014084, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI153792144, Length=273, Percent_Identity=29.6703296703297, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI47078218, Length=270, Percent_Identity=28.8888888888889, Blast_Score=116, Evalue=3e-26, Organism=Homo sapiens, GI45446740, Length=270, Percent_Identity=28.8888888888889, Blast_Score=116, Evalue=3e-26, Organism=Homo sapiens, GI150417984, Length=210, Percent_Identity=29.0476190476191, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI116734710, Length=212, Percent_Identity=30.188679245283, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI105990541, Length=225, Percent_Identity=27.5555555555556, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI27477115, Length=254, Percent_Identity=28.740157480315, Blast_Score=108, Evalue=8e-24, Organism=Homo sapiens, GI6005701, Length=297, Percent_Identity=25.5892255892256, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI27881501, Length=209, Percent_Identity=29.6650717703349, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI30795238, Length=209, Percent_Identity=29.6650717703349, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI108773784, Length=189, Percent_Identity=30.6878306878307, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI108773782, Length=189, Percent_Identity=30.6878306878307, Blast_Score=74, Evalue=2e-13, Organism=Escherichia coli, GI87081782, Length=248, Percent_Identity=27.8225806451613, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=29.4117647058824, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1786319, Length=253, Percent_Identity=27.6679841897233, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI87082268, Length=236, Percent_Identity=30.5084745762712, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788225, Length=214, Percent_Identity=28.9719626168224, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789593, Length=234, Percent_Identity=28.2051282051282, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI87081791, Length=214, Percent_Identity=27.5700934579439, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI87081709, Length=220, Percent_Identity=26.8181818181818, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI48994943, Length=211, Percent_Identity=26.5402843601896, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI87081834, Length=219, Percent_Identity=26.4840182648402, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1790739, Length=211, Percent_Identity=28.9099526066351, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1788472, Length=237, Percent_Identity=28.2700421940928, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1790525, Length=234, Percent_Identity=26.4957264957265, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1789891, Length=208, Percent_Identity=27.4038461538462, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1787105, Length=216, Percent_Identity=28.2407407407407, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787712, Length=215, Percent_Identity=27.906976744186, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=28.7037037037037, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1787112, Length=225, Percent_Identity=27.1111111111111, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1788761, Length=242, Percent_Identity=26.8595041322314, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1790190, Length=222, Percent_Identity=23.4234234234234, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI48995001, Length=247, Percent_Identity=26.7206477732794, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1789672, Length=220, Percent_Identity=26.8181818181818, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1786345, Length=210, Percent_Identity=28.0952380952381, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1789032, Length=217, Percent_Identity=26.2672811059908, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1790467, Length=265, Percent_Identity=23.3962264150943, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1788210, Length=218, Percent_Identity=28.4403669724771, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787792, Length=229, Percent_Identity=26.6375545851528, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788450, Length=234, Percent_Identity=23.5042735042735, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI48994997, Length=237, Percent_Identity=24.0506329113924, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788897, Length=222, Percent_Identity=23.8738738738739, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790162, Length=221, Percent_Identity=26.2443438914027, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787089, Length=217, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786398, Length=223, Percent_Identity=23.7668161434978, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786253, Length=196, Percent_Identity=27.0408163265306, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787370, Length=190, Percent_Identity=27.8947368421053, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1789586, Length=228, Percent_Identity=28.0701754385965, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786803, Length=215, Percent_Identity=26.9767441860465, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789991, Length=238, Percent_Identity=25.2100840336134, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788165, Length=206, Percent_Identity=28.6407766990291, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786872, Length=204, Percent_Identity=26.9607843137255, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788644, Length=232, Percent_Identity=28.0172413793103, Blast_Score=65, Evalue=8e-12, Organism=Escherichia coli, GI1786563, Length=194, Percent_Identity=27.8350515463918, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787164, Length=242, Percent_Identity=22.7272727272727, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI87082267, Length=213, Percent_Identity=21.5962441314554, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17565586, Length=267, Percent_Identity=27.3408239700375, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI115533608, Length=206, Percent_Identity=31.0679611650485, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI71983516, Length=273, Percent_Identity=24.9084249084249, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71983523, Length=273, Percent_Identity=24.9084249084249, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71983510, Length=273, Percent_Identity=24.9084249084249, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17510237, Length=273, Percent_Identity=26.3736263736264, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI193202878, Length=248, Percent_Identity=24.5967741935484, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI133930907, Length=253, Percent_Identity=23.3201581027668, Blast_Score=67, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6320296, Length=185, Percent_Identity=30.2702702702703, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6320214, Length=215, Percent_Identity=30.2325581395349, Blast_Score=69, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6320614, Length=212, Percent_Identity=30.6603773584906, Blast_Score=68, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6324904, Length=214, Percent_Identity=29.4392523364486, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324727, Length=206, Percent_Identity=30.0970873786408, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI24666092, Length=209, Percent_Identity=30.622009569378, Blast_Score=115, Evalue=5e-26, Organism=Drosophila melanogaster, GI24643674, Length=253, Percent_Identity=28.4584980237154, Blast_Score=114, Evalue=9e-26, Organism=Drosophila melanogaster, GI28573573, Length=205, Percent_Identity=29.7560975609756, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI28573571, Length=205, Percent_Identity=29.7560975609756, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI24648314, Length=210, Percent_Identity=31.9047619047619, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI221512771, Length=222, Percent_Identity=29.7297297297297, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI28574150, Length=213, Percent_Identity=30.5164319248826, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI116007328, Length=213, Percent_Identity=30.5164319248826, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI28571209, Length=192, Percent_Identity=28.125, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI24650855, Length=221, Percent_Identity=29.8642533936652, Blast_Score=92, Evalue=6e-19, Organism=Drosophila melanogaster, GI24650853, Length=221, Percent_Identity=29.8642533936652, Blast_Score=92, Evalue=6e-19, Organism=Drosophila melanogaster, GI24582014, Length=213, Percent_Identity=27.6995305164319, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI24582012, Length=213, Percent_Identity=27.6995305164319, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI221500365, Length=232, Percent_Identity=25.8620689655172, Blast_Score=89, Evalue=5e-18, Organism=Drosophila melanogaster, GI116007184, Length=232, Percent_Identity=25.8620689655172, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI85725262, Length=229, Percent_Identity=28.3842794759825, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI281362751, Length=221, Percent_Identity=29.8642533936652, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI24648279, Length=200, Percent_Identity=33, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI161078426, Length=200, Percent_Identity=33, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI221500419, Length=281, Percent_Identity=23.8434163701068, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24661270, Length=184, Percent_Identity=29.8913043478261, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI21355589, Length=184, Percent_Identity=29.8913043478261, Blast_Score=68, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015851 - InterPro: IPR005978 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 34623; Mature: 34623
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKANNLIIDSISKTYKKGKIRANDNISLELYPSEITALIGHNGAGKTTLLNQIIGNAKPD CCCCCEEHHHHHHHHHCCCEEECCCEEEEEEHHHHHHHHCCCCCCHHHHHHHHHCCCCCC SGDITYKGISLVKNSKVARELVSIMPQFHAPLEGVTLRQSIESILRIKGVSEKQVHLCTK CCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH QVLKDLDIEQWADQAGNKLSGGLQRLTSFAMAVAYPSDIILLDEPTNDVDPIRRKLTWQY HHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH MRKLAKEGHMIFVVTHNLLEVEQYTDRYILLNKGRIIRDDSTAVISNDYVSNVMIVSLHD HHHHHHCCCEEEEEECCHHHHHHHCCCEEEEECCEEEECCCCEEEECCCCCCEEEEEECC TDELHDLPEAETSEYKEDEMQLVLTLSENQVSNAVNWLMELIRQGKVLNYKFTSATLDMQ CHHHHCCCCCCHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEE YGGMIDGE ECCCCCCC >Mature Secondary Structure MKANNLIIDSISKTYKKGKIRANDNISLELYPSEITALIGHNGAGKTTLLNQIIGNAKPD CCCCCEEHHHHHHHHHCCCEEECCCEEEEEEHHHHHHHHCCCCCCHHHHHHHHHCCCCCC SGDITYKGISLVKNSKVARELVSIMPQFHAPLEGVTLRQSIESILRIKGVSEKQVHLCTK CCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH QVLKDLDIEQWADQAGNKLSGGLQRLTSFAMAVAYPSDIILLDEPTNDVDPIRRKLTWQY HHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH MRKLAKEGHMIFVVTHNLLEVEQYTDRYILLNKGRIIRDDSTAVISNDYVSNVMIVSLHD HHHHHHCCCEEEEEECCHHHHHHHCCCEEEEECCEEEECCCCEEEECCCCCCEEEEEECC TDELHDLPEAETSEYKEDEMQLVLTLSENQVSNAVNWLMELIRQGKVLNYKFTSATLDMQ CHHHHCCCCCCHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEE YGGMIDGE ECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2251131; 12003951; 11214968 [H]