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The map label for this gene is 238925377

Identifier: 238925377

GI number: 238925377

Start: 2908134

End: 2908688

Strand: Reverse

Name: 238925377

Synonym: EUBREC_3032

Alternate gene names: NA

Gene position: 2908688-2908134 (Counterclockwise)

Preceding gene: 238925378

Following gene: 238925376

Centisome position: 84.32

GC content: 47.75

Gene sequence:

>555_bases
ATGTACACACAGGAACAGATACTTGATATGTATTTTGATCGCAACCAGCAGGCTGTCAGTGCGACCTCGCAGATGTACGG
AGCGAAGCTTACCCGGTTTGCAGACACGATGATAGCACATGAGGATGCACTGGAATGCGTAAATGACACATACATAGCAG
CATGGAACAAGATACCGCCGGAGCGCCCTATGCGTTTCCTTTCCTGGCTTTACAGGGTATGCCGCAATATCGTCTGCGAC
AGGATTGACTGGAATAATGCTTCAAAGAGAAATTCCAACATGAACTGTATGCTTGATGAGCTTGAGGAGTGCCTTGCAGA
CAGCAATGCAAAATACGAGGGCGAGCTGTCGGACATTGGAAGGTGTTTATCGGATTTTCTGAACGGACTGGAGACGGAAA
AGAGAGTGCTTTTCGTGAGACGCTACTGGTATGGCATGACGATTGATGAGCTGGCAGATATGAGCGGCAGGAGCAAGAGC
AGCGTAAAGACCACATTGTTCAGGATAAGGGCAGAGCTTAAAAAATATCTGGATGAGGAGGGCGTATATCTATGA

Upstream 100 bases:

>100_bases
CTTAAAGTTTACATAAGGGAAATTTTAAAGAATTTATGATGAGATGTAACCCCCACCAAACAAAATCCTACATAATAGAT
AGAAGGGAGGTTTGTGGAAA

Downstream 100 bases:

>100_bases
CGAAAAAGGATTTATTTGATGGTTTAAATTACATCGATGACCAAATAATTGAAGAAGCGCAGCCGACCGGAGAATCGGCC
GGGTACAGTGATGAAATTTA

Product: putative RNA polymerase sigma factor (ECF subfamily)

Products: NA

Alternate protein names: RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; DNA-Directed RNA Polymeracialized Sigma Subunit

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MYTQEQILDMYFDRNQQAVSATSQMYGAKLTRFADTMIAHEDALECVNDTYIAAWNKIPPERPMRFLSWLYRVCRNIVCD
RIDWNNASKRNSNMNCMLDELEECLADSNAKYEGELSDIGRCLSDFLNGLETEKRVLFVRRYWYGMTIDELADMSGRSKS
SVKTTLFRIRAELKKYLDEEGVYL

Sequences:

>Translated_184_residues
MYTQEQILDMYFDRNQQAVSATSQMYGAKLTRFADTMIAHEDALECVNDTYIAAWNKIPPERPMRFLSWLYRVCRNIVCD
RIDWNNASKRNSNMNCMLDELEECLADSNAKYEGELSDIGRCLSDFLNGLETEKRVLFVRRYWYGMTIDELADMSGRSKS
SVKTTLFRIRAELKKYLDEEGVYL
>Mature_184_residues
MYTQEQILDMYFDRNQQAVSATSQMYGAKLTRFADTMIAHEDALECVNDTYIAAWNKIPPERPMRFLSWLYRVCRNIVCD
RIDWNNASKRNSNMNCMLDELEECLADSNAKYEGELSDIGRCLSDFLNGLETEKRVLFVRRYWYGMTIDELADMSGRSKS
SVKTTLFRIRAELKKYLDEEGVYL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21573; Mature: 21573

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
8.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTQEQILDMYFDRNQQAVSATSQMYGAKLTRFADTMIAHEDALECVNDTYIAAWNKIPP
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC
ERPMRFLSWLYRVCRNIVCDRIDWNNASKRNSNMNCMLDELEECLADSNAKYEGELSDIG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHH
RCLSDFLNGLETEKRVLFVRRYWYGMTIDELADMSGRSKSSVKTTLFRIRAELKKYLDEE
HHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
GVYL
CCCC
>Mature Secondary Structure
MYTQEQILDMYFDRNQQAVSATSQMYGAKLTRFADTMIAHEDALECVNDTYIAAWNKIPP
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC
ERPMRFLSWLYRVCRNIVCDRIDWNNASKRNSNMNCMLDELEECLADSNAKYEGELSDIG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHH
RCLSDFLNGLETEKRVLFVRRYWYGMTIDELADMSGRSKSSVKTTLFRIRAELKKYLDEE
HHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
GVYL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA