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The map label for this gene is ydeL [H]

Identifier: 238925295

GI number: 238925295

Start: 2831785

End: 2833182

Strand: Reverse

Name: ydeL [H]

Synonym: EUBREC_2949

Alternate gene names: 238925295

Gene position: 2833182-2831785 (Counterclockwise)

Preceding gene: 238925296

Following gene: 238925294

Centisome position: 82.13

GC content: 46.07

Gene sequence:

>1398_bases
ATGCTGACCTACGACCTCACAAAAACAGACGGACCACTCTACAAATGCCTTTATGAGTGCATCAAAAACGATATATCACA
GGGAAAATTAAGCTCCGGGGAGAAAATGCCATCAAAACGTACCCTCGCCAAGAATCTGGGAGTTAGTACCATTACGGTTG
AAAATGCATATGACCAGTTGATAGGCGAGGGCTATATGTTTGCAAGGCCCAAGAAGGGCTATTTCATAGCCGATGTGTCA
GATATCAGAGTAATCAAGGCACCGGTGCAGAAGGAGCTTAGCATAAAGCTGCCGCCTGAGCAGGATGAAAGTATATTTGA
CTTCTCATCAAACAGGACAGACTCGGGTAACTTTCCGTTTTCTATATGGGCAAAGCTCATGCGAGAGACGATTTCCCTTA
GGGAGCAGGAGCTTTTGTCGGTGTCGCCGTGTGGCGGAGTGAGAGAGCTTCGGGAAGCGATAGCAAGCCATCTGTCATCG
TTTCGCGGTATGAATGTGGACCCGGACCAGATAATAGTCGGAGCGGGAACAGAGTATCTGTACGGACTGCTTGTGAAGCT
TTTGGGTACGGACAAGGTATACTGCGTGGAGGATCCGGGCTATAAGAAAATCAGCCAGATATATGAGTGCAACAATGCAA
AATGTCTGCCGGTGCAGATGGATGAGCAGGGCATCAGCGTGGAGCTTATAAAGAAAGCGAACGCGCAGATAGCACATATC
AGCCCGACACACCATTTTCCGACAGGAATCACCATGCCTGTGAACCGCCGCTATGAGCTTTTGGCATGGGCCAACGAGAG
CAGCGACAGATACATCATAGAGGATGATTATGACAGTGAGTTTCGCATGAACGGACACCCGATACCGCCCATCCTCTCGA
TAGATGCGTGTGAAAAGGTCATCTATATAAATACATTTTCAAAGTCTCTCACATCCACCATCCGAATCAGCTACATGGTG
CTGCCGGAGCATCTGGCAAATGAGTTTTACAGGAGGCTTTCATTTTACTCATGTACGGTATCCACCTTCGAGCAGTACAC
GCTGGCACGATTTATCAGCGAGGGCTATTTTGAAAAGCACATAAACAGGATGAGACTGCACTACGGCAGAAAGCGCCAGA
GCGTGCTTTCGTCCATAAAAGGCTGCTTCACTGAAAAGGAATGCAGGGTGATAGAAAATGACTCCGGACTGCATTTTATC
ATACAGTTTGACACGAACCTTCCGGACAAAACAGTTGAAGAAAGGCTTTTGAAAAAAGGTATAAAGCTTCAGGCGATTAC
CCATTTCAACCTGATCAAGCCAAAGGAGGACAGGCATCAGTTTATTATCAATTACTCAAATATTGATGCAGACAGGATAA
TGGATGAGCTTTTAATTATTAAAGATACAATACTTTAA

Upstream 100 bases:

>100_bases
CACACCAGCCGCATATCATGGTTGCAATAATACGCCACATCTGGTAATATTAAAATATTCAAAATAAGGAAAATAAAAAT
GCCAGAAAGCGGTGAATCAA

Downstream 100 bases:

>100_bases
CCAGACAGTACTTTAATAAAGCCGACTATAAAGCATATAAATAGTGTATACAAATAATAAATTCAAACAGTGCGAATAAT
TTATGTGTGTAAAAATTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MLTYDLTKTDGPLYKCLYECIKNDISQGKLSSGEKMPSKRTLAKNLGVSTITVENAYDQLIGEGYMFARPKKGYFIADVS
DIRVIKAPVQKELSIKLPPEQDESIFDFSSNRTDSGNFPFSIWAKLMRETISLREQELLSVSPCGGVRELREAIASHLSS
FRGMNVDPDQIIVGAGTEYLYGLLVKLLGTDKVYCVEDPGYKKISQIYECNNAKCLPVQMDEQGISVELIKKANAQIAHI
SPTHHFPTGITMPVNRRYELLAWANESSDRYIIEDDYDSEFRMNGHPIPPILSIDACEKVIYINTFSKSLTSTIRISYMV
LPEHLANEFYRRLSFYSCTVSTFEQYTLARFISEGYFEKHINRMRLHYGRKRQSVLSSIKGCFTEKECRVIENDSGLHFI
IQFDTNLPDKTVEERLLKKGIKLQAITHFNLIKPKEDRHQFIINYSNIDADRIMDELLIIKDTIL

Sequences:

>Translated_465_residues
MLTYDLTKTDGPLYKCLYECIKNDISQGKLSSGEKMPSKRTLAKNLGVSTITVENAYDQLIGEGYMFARPKKGYFIADVS
DIRVIKAPVQKELSIKLPPEQDESIFDFSSNRTDSGNFPFSIWAKLMRETISLREQELLSVSPCGGVRELREAIASHLSS
FRGMNVDPDQIIVGAGTEYLYGLLVKLLGTDKVYCVEDPGYKKISQIYECNNAKCLPVQMDEQGISVELIKKANAQIAHI
SPTHHFPTGITMPVNRRYELLAWANESSDRYIIEDDYDSEFRMNGHPIPPILSIDACEKVIYINTFSKSLTSTIRISYMV
LPEHLANEFYRRLSFYSCTVSTFEQYTLARFISEGYFEKHINRMRLHYGRKRQSVLSSIKGCFTEKECRVIENDSGLHFI
IQFDTNLPDKTVEERLLKKGIKLQAITHFNLIKPKEDRHQFIINYSNIDADRIMDELLIIKDTIL
>Mature_465_residues
MLTYDLTKTDGPLYKCLYECIKNDISQGKLSSGEKMPSKRTLAKNLGVSTITVENAYDQLIGEGYMFARPKKGYFIADVS
DIRVIKAPVQKELSIKLPPEQDESIFDFSSNRTDSGNFPFSIWAKLMRETISLREQELLSVSPCGGVRELREAIASHLSS
FRGMNVDPDQIIVGAGTEYLYGLLVKLLGTDKVYCVEDPGYKKISQIYECNNAKCLPVQMDEQGISVELIKKANAQIAHI
SPTHHFPTGITMPVNRRYELLAWANESSDRYIIEDDYDSEFRMNGHPIPPILSIDACEKVIYINTFSKSLTSTIRISYMV
LPEHLANEFYRRLSFYSCTVSTFEQYTLARFISEGYFEKHINRMRLHYGRKRQSVLSSIKGCFTEKECRVIENDSGLHFI
IQFDTNLPDKTVEERLLKKGIKLQAITHFNLIKPKEDRHQFIINYSNIDADRIMDELLIIKDTIL

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787710, Length=439, Percent_Identity=26.1958997722096, Blast_Score=121, Evalue=9e-29,
Organism=Escherichia coli, GI1790797, Length=444, Percent_Identity=27.2522522522523, Blast_Score=120, Evalue=3e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53252; Mature: 53252

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTYDLTKTDGPLYKCLYECIKNDISQGKLSSGEKMPSKRTLAKNLGVSTITVENAYDQL
CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCEEEEECHHHHHH
IGEGYMFARPKKGYFIADVSDIRVIKAPVQKELSIKLPPEQDESIFDFSSNRTDSGNFPF
HCCCEEEECCCCCEEEEECCCCEEEECCCCCCCEEECCCCCCCCEEECCCCCCCCCCCCH
SIWAKLMRETISLREQELLSVSPCGGVRELREAIASHLSSFRGMNVDPDQIIVGAGTEYL
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHH
YGLLVKLLGTDKVYCVEDPGYKKISQIYECNNAKCLPVQMDEQGISVELIKKANAQIAHI
HHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCEEEEE
SPTHHFPTGITMPVNRRYELLAWANESSDRYIIEDDYDSEFRMNGHPIPPILSIDACEKV
CCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEECCCCCCCEEECCCCCEE
IYINTFSKSLTSTIRISYMVLPEHLANEFYRRLSFYSCTVSTFEQYTLARFISEGYFEKH
EEEECHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHH
INRMRLHYGRKRQSVLSSIKGCFTEKECRVIENDSGLHFIIQFDTNLPDKTVEERLLKKG
HHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCHHHHHHHHHHCC
IKLQAITHFNLIKPKEDRHQFIINYSNIDADRIMDELLIIKDTIL
CEEEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLTYDLTKTDGPLYKCLYECIKNDISQGKLSSGEKMPSKRTLAKNLGVSTITVENAYDQL
CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCEEEEECHHHHHH
IGEGYMFARPKKGYFIADVSDIRVIKAPVQKELSIKLPPEQDESIFDFSSNRTDSGNFPF
HCCCEEEECCCCCEEEEECCCCEEEECCCCCCCEEECCCCCCCCEEECCCCCCCCCCCCH
SIWAKLMRETISLREQELLSVSPCGGVRELREAIASHLSSFRGMNVDPDQIIVGAGTEYL
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHH
YGLLVKLLGTDKVYCVEDPGYKKISQIYECNNAKCLPVQMDEQGISVELIKKANAQIAHI
HHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCEEEEE
SPTHHFPTGITMPVNRRYELLAWANESSDRYIIEDDYDSEFRMNGHPIPPILSIDACEKV
CCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEECCCCCCCEEECCCCCEE
IYINTFSKSLTSTIRISYMVLPEHLANEFYRRLSFYSCTVSTFEQYTLARFISEGYFEKH
EEEECHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHH
INRMRLHYGRKRQSVLSSIKGCFTEKECRVIENDSGLHFIIQFDTNLPDKTVEERLLKKG
HHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCHHHHHHHHHHCC
IKLQAITHFNLIKPKEDRHQFIINYSNIDADRIMDELLIIKDTIL
CEEEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]