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The map label for this gene is atpD [H]

Identifier: 238925243

GI number: 238925243

Start: 2774830

End: 2776221

Strand: Reverse

Name: atpD [H]

Synonym: EUBREC_2897

Alternate gene names: 238925243

Gene position: 2776221-2774830 (Counterclockwise)

Preceding gene: 238925244

Following gene: 238925242

Centisome position: 80.48

GC content: 48.64

Gene sequence:

>1392_bases
ATGAAAACAGGAAAAATTATCCAGGTTATGGGTCCTGTTGTCGATGTAGAGTTCGAGGATGAGAACCTGCCGGCAATCAG
AGACGCACTAGAAGTTTTAAATGGTGACAAAAAAAGTGTGATGGAAGTCGCACAGCATATTGGAAATAATACAGTACGCT
GTATCATGCTTGCTTCCAGTGAGGGACTTCACAGAGATATGGAAGTAACAGCCACAGGCGCCGGCATCAAGACACCTGTC
GGAGAGCAGACTCTCGGCAGACTGTTCAACGTGCTCGGTGAAGCTATCGATGGCGGAGCACAGCCTGATACAGAAGAAAA
ATGGGAAATCCACAGAGAACCACCAACATTTGAGGAGCAGAACCCTGCAGAGGAAATCCTCGAGACAGGTATCAAGGTTA
TCGACCTCCTTGCCCCATATGCAAAGGGTGGAAAAATCGGACTCTTCGGAGGAGCCGGAGTAGGAAAAACAGTCCTCATC
CAGGAGCTCATCAGCAATATCGCAACAGAGCACGGCGGCTACTCAATCTTTACAGGAGTCGGAGAGCGTTCCAGAGAGGG
AAATGATCTCTGGACAGAAATGAAGGAATCAGGAGTTCTGGAAAAAACAGCCTTAGTGTTCGGACAGATGAACGAGCCAC
CAGGAGCACGTATGCGTGTAGCTGAGACAGGACTTACAATGGCAGAGTATTTCAGGGATGAGAAGCACCAGAACGTGCTG
CTTTTCATCGACAATATATTCCGTTTCACACAGGCAGGTTCAGAGGTTTCAGCACTTTTAGGACGTATGCCTTCAGCCGT
AGGTTATCAGCCTACACTGGCTACTGAGATGGGTGAGCTGCAGGAGAGAATCGCATCTACAAAGAACGGTTCGGTAACAT
CGGTACAGGCCGTATACGTACCAGCCGATGACCTCACAGACCCGGCTCCGGCTACAACTTTCGCACATCTGGATGCCACA
ACAGTTCTTTCAAGAAAGATTGTTGAACAGGGTATTTACCCGGCAGTAGACCCGCTTGAGTCTACATCACGTATCCTCGA
GCCTGATATCGTAGGCGAGGAGCATTACCAGGTAGCACGAAAGGTACAGGAGATTCTCCAGAAGTACAAGGAGCTGCAGG
ATATCATCGCAATCCTCGGTATGGAGGAGCTGGCAGATGAGGACAAGGTACTTGTATACAGAGCAAGAAAAATCCAGAAG
TTCCTCTCACAGCCATTCCACGTAGCTGAGAACTTCACAGGTATCCAGGGTGTCTATGTGCCTGTAGAGGAGACTATCAA
GGGCTTCAAGGCCATCATAGATGGTGAGATGGACGAGTATCCTGAGAACGCATTTTTCAATGTCGGAACAATCGAGGACG
TCAAGGAAAAAGCAAAGACTATGCAGCAGTAA

Upstream 100 bases:

>100_bases
TTCTTTACAACCGTGCCAGACAGGCAGCGATTACACAGGAGATTACAGAGGTAATAGCCGGTGCTAAATCGCAGAAGAAA
AAGAGAAAGTAGGCTTTTTG

Downstream 100 bases:

>100_bases
AAGCATAAGGAAGGACAAATCGTATGGCAACAAATACATTTTATCTAAAGGTAATAGCTGCTAACAGAGTGTTTTACTCA
GGAAGATGTCGTTCCATAAT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MKTGKIIQVMGPVVDVEFEDENLPAIRDALEVLNGDKKSVMEVAQHIGNNTVRCIMLASSEGLHRDMEVTATGAGIKTPV
GEQTLGRLFNVLGEAIDGGAQPDTEEKWEIHREPPTFEEQNPAEEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLI
QELISNIATEHGGYSIFTGVGERSREGNDLWTEMKESGVLEKTALVFGQMNEPPGARMRVAETGLTMAEYFRDEKHQNVL
LFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERIASTKNGSVTSVQAVYVPADDLTDPAPATTFAHLDAT
TVLSRKIVEQGIYPAVDPLESTSRILEPDIVGEEHYQVARKVQEILQKYKELQDIIAILGMEELADEDKVLVYRARKIQK
FLSQPFHVAENFTGIQGVYVPVEETIKGFKAIIDGEMDEYPENAFFNVGTIEDVKEKAKTMQQ

Sequences:

>Translated_463_residues
MKTGKIIQVMGPVVDVEFEDENLPAIRDALEVLNGDKKSVMEVAQHIGNNTVRCIMLASSEGLHRDMEVTATGAGIKTPV
GEQTLGRLFNVLGEAIDGGAQPDTEEKWEIHREPPTFEEQNPAEEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLI
QELISNIATEHGGYSIFTGVGERSREGNDLWTEMKESGVLEKTALVFGQMNEPPGARMRVAETGLTMAEYFRDEKHQNVL
LFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERIASTKNGSVTSVQAVYVPADDLTDPAPATTFAHLDAT
TVLSRKIVEQGIYPAVDPLESTSRILEPDIVGEEHYQVARKVQEILQKYKELQDIIAILGMEELADEDKVLVYRARKIQK
FLSQPFHVAENFTGIQGVYVPVEETIKGFKAIIDGEMDEYPENAFFNVGTIEDVKEKAKTMQQ
>Mature_463_residues
MKTGKIIQVMGPVVDVEFEDENLPAIRDALEVLNGDKKSVMEVAQHIGNNTVRCIMLASSEGLHRDMEVTATGAGIKTPV
GEQTLGRLFNVLGEAIDGGAQPDTEEKWEIHREPPTFEEQNPAEEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLI
QELISNIATEHGGYSIFTGVGERSREGNDLWTEMKESGVLEKTALVFGQMNEPPGARMRVAETGLTMAEYFRDEKHQNVL
LFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERIASTKNGSVTSVQAVYVPADDLTDPAPATTFAHLDAT
TVLSRKIVEQGIYPAVDPLESTSRILEPDIVGEEHYQVARKVQEILQKYKELQDIIAILGMEELADEDKVLVYRARKIQK
FLSQPFHVAENFTGIQGVYVPVEETIKGFKAIIDGEMDEYPENAFFNVGTIEDVKEKAKTMQQ

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=467, Percent_Identity=67.8800856531049, Blast_Score=628, Evalue=1e-180,
Organism=Homo sapiens, GI19913424, Length=319, Percent_Identity=30.4075235109718, Blast_Score=132, Evalue=9e-31,
Organism=Homo sapiens, GI19913428, Length=399, Percent_Identity=25.8145363408521, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI19913426, Length=395, Percent_Identity=25.5696202531646, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI50345984, Length=400, Percent_Identity=26, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI4757810, Length=400, Percent_Identity=26, Blast_Score=102, Evalue=9e-22,
Organism=Escherichia coli, GI1790170, Length=461, Percent_Identity=65.5097613882863, Blast_Score=619, Evalue=1e-179,
Organism=Escherichia coli, GI1788251, Length=323, Percent_Identity=30.6501547987616, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1790172, Length=425, Percent_Identity=24.2352941176471, Blast_Score=110, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=467, Percent_Identity=65.7387580299786, Blast_Score=622, Evalue=1e-178,
Organism=Caenorhabditis elegans, GI17565854, Length=322, Percent_Identity=31.6770186335404, Blast_Score=135, Evalue=5e-32,
Organism=Caenorhabditis elegans, GI17570191, Length=419, Percent_Identity=25.0596658711217, Blast_Score=130, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17510931, Length=349, Percent_Identity=24.9283667621776, Blast_Score=122, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI71988080, Length=390, Percent_Identity=24.1025641025641, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI71988063, Length=390, Percent_Identity=24.1025641025641, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI71988074, Length=368, Percent_Identity=23.0978260869565, Blast_Score=80, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6322581, Length=457, Percent_Identity=68.7089715536105, Blast_Score=629, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=354, Percent_Identity=27.1186440677966, Blast_Score=132, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6320016, Length=262, Percent_Identity=27.4809160305344, Blast_Score=94, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6319370, Length=366, Percent_Identity=25.1366120218579, Blast_Score=90, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24638766, Length=467, Percent_Identity=68.0942184154176, Blast_Score=634, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=467, Percent_Identity=64.0256959314775, Blast_Score=587, Evalue=1e-168,
Organism=Drosophila melanogaster, GI24583988, Length=348, Percent_Identity=29.5977011494253, Blast_Score=139, Evalue=3e-33,
Organism=Drosophila melanogaster, GI24583986, Length=348, Percent_Identity=29.5977011494253, Blast_Score=139, Evalue=3e-33,
Organism=Drosophila melanogaster, GI24583984, Length=348, Percent_Identity=29.5977011494253, Blast_Score=139, Evalue=3e-33,
Organism=Drosophila melanogaster, GI24583992, Length=319, Percent_Identity=31.0344827586207, Blast_Score=135, Evalue=5e-32,
Organism=Drosophila melanogaster, GI20129479, Length=347, Percent_Identity=27.9538904899135, Blast_Score=131, Evalue=8e-31,
Organism=Drosophila melanogaster, GI281361666, Length=356, Percent_Identity=27.247191011236, Blast_Score=129, Evalue=5e-30,
Organism=Drosophila melanogaster, GI24646341, Length=356, Percent_Identity=27.247191011236, Blast_Score=129, Evalue=5e-30,
Organism=Drosophila melanogaster, GI17136796, Length=356, Percent_Identity=27.247191011236, Blast_Score=129, Evalue=5e-30,
Organism=Drosophila melanogaster, GI24658560, Length=384, Percent_Identity=25, Blast_Score=105, Evalue=6e-23,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=54.3478260869565, Blast_Score=96, Evalue=7e-20,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50872; Mature: 50872

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTGKIIQVMGPVVDVEFEDENLPAIRDALEVLNGDKKSVMEVAQHIGNNTVRCIMLASS
CCCCCEEEEECCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEECC
EGLHRDMEVTATGAGIKTPVGEQTLGRLFNVLGEAIDGGAQPDTEEKWEIHREPPTFEEQ
CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCC
NPAEEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELISNIATEHGGYSIFTGV
CCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
GERSREGNDLWTEMKESGVLEKTALVFGQMNEPPGARMRVAETGLTMAEYFRDEKHQNVL
CCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEHHHCCHHHHHHHHHCCCEEE
LFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERIASTKNGSVTSVQAVYV
EEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
PADDLTDPAPATTFAHLDATTVLSRKIVEQGIYPAVDPLESTSRILEPDIVGEEHYQVAR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHH
KVQEILQKYKELQDIIAILGMEELADEDKVLVYRARKIQKFLSQPFHVAENFTGIQGVYV
HHHHHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCEEEE
PVEETIKGFKAIIDGEMDEYPENAFFNVGTIEDVKEKAKTMQQ
CHHHHHHHHHHHHCCCHHCCCCCCEEECCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKTGKIIQVMGPVVDVEFEDENLPAIRDALEVLNGDKKSVMEVAQHIGNNTVRCIMLASS
CCCCCEEEEECCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEECC
EGLHRDMEVTATGAGIKTPVGEQTLGRLFNVLGEAIDGGAQPDTEEKWEIHREPPTFEEQ
CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCC
NPAEEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELISNIATEHGGYSIFTGV
CCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
GERSREGNDLWTEMKESGVLEKTALVFGQMNEPPGARMRVAETGLTMAEYFRDEKHQNVL
CCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEHHHCCHHHHHHHHHCCCEEE
LFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERIASTKNGSVTSVQAVYV
EEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
PADDLTDPAPATTFAHLDATTVLSRKIVEQGIYPAVDPLESTSRILEPDIVGEEHYQVAR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHH
KVQEILQKYKELQDIIAILGMEELADEDKVLVYRARKIQKFLSQPFHVAENFTGIQGVYV
HHHHHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCEEEE
PVEETIKGFKAIIDGEMDEYPENAFFNVGTIEDVKEKAKTMQQ
CHHHHHHHHHHHHCCCHHCCCCCCEEECCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]