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The map label for this gene is yddH [H]

Identifier: 238925064

GI number: 238925064

Start: 2585118

End: 2586785

Strand: Direct

Name: yddH [H]

Synonym: EUBREC_2717

Alternate gene names: 238925064

Gene position: 2585118-2586785 (Clockwise)

Preceding gene: 238925063

Following gene: 238925065

Centisome position: 74.94

GC content: 57.91

Gene sequence:

>1668_bases
ATGAGGCAGGAGGATGAAGCGGACGGGCCGCAGGATACCGGCAAGGCACAGGAGCCGGAGGGCTCCGCCGAGAAGGTCGG
GAGCAAAAAGGGCAAGTACCAGAAAGCACAGGCAAAAGCGGAACACACCGGGGAAAAGCTGGGAAAGGCCCGGGAGAAAC
TGGACAAGACCGAGGCAAAACGGGCAGCGAAGAAGCCGCCGGGGCTTGCAAAAAAGGCAGTCCGGGGAGCCCGTACAGAA
GCGTGGTTCTATGTCCACAACAAGATACACGAGGTTGAGCATGAAAATGTGGGTGTGGAAGGAGCCCATAAATCCGAGCT
GGCCGCAGAGGCCGGAGCCCGGAAACTGACCCGCTATGCCAAACGCCGCTGGCGGGAACACCCAGCCCGGAAGGTGGCAA
AGTGGGAACGGAAGGACATAAAAGCCCGGGCCAATGTGGATTTTCAGAAGATGGCCTCCGAGCACCCGGAACTTGCCAGC
AATCCGCTTTCCCGTGTGCAGCAGAAATGGAAACTGAAACGCCGGTATTCCAAAGAGGCAAAAGCGGCTGCAAAACAGGG
CGCAAAGGCCGCAAAGAAAACCGCTGCCGCTTCGGGAACTGCGACCCGGCGGGCAGCGCAGTTTGTGACCCGTCATCCCG
TGGCGGTGCTGGTCCTGCTCCTGCTGTTGCTGCTCTGTTTTCTTGTGTCGGCGGTAAGTTCCATTTTCCCCACGCTTGGC
AGCGGCCTTGCCAATGCGTTATCCGGCACCTCCTACGCCTCGGAGGATACGGACCTGCTGGGGGTGGACGAGGACTATAC
AGCGTTGGAAAACGAGCTGGCGCAGACGGTGGCGAACATTGAAAGCACCCATCCCGGCTATGACGAGTACCGCTATTCCG
TGGACGAGATCGGCCATAACCCCTATGAGCTGGCATCCTATTTCTCTGCAAAGTACCATGTCTATTTCCGGGAACAGGTG
CAGGACGAACTGCGGGAGATTTTCGAGGCACAGTATGAGCTGACCTTGACGGAGGAAGTCGAGATACGCTACCGCACCGA
AACCAGCACCGACCCGGAGACCGGGGAAACCACCACCGAGGAAGTCCCCTATGAGTATTACATTCTCAATGTGACCCTCA
CAAACAAGACGCTGCCCGCCGTGATCCTGCCGAGGCTTAACGAACAGCAGCGGGAAATCTACACCGTTATGCAGCAGCTC
AAAGGCAACAAACCCTATCTGTGGGAAGGGATTTACAACGGCGGCGAAGATACCGGCCCCAGCTATGAGATACCCGGCGA
GGCGCTGGATGACCCGGCTTTTGCGGCGCTCATGGAAGAAGCCACAAAGTACATCGGCTGGCCCTATGTGTGGGGCGGCT
CCAGCCCGTCCACCTCCTTTGACTGTTCGGGCTTTGTCTGCTGGGTGTACACGGCCAGCGGCGTCCACAACCTGCCCCGT
ACCACGGCGCAGGGCATTTATAACCAGTGCGCTATCATTTTCCCCTCCGAGGCAAAGCCCGGCGACATTATCTTTTTCAC
GGGAACCTATGACAGCCCCGGCCCTGTGTCCCATGTGGGGATTTATGTGGGCGACGGGATGATGCTCCATTGTGGTTCGC
CCATCCAATACGCAAACATCAATTCAAGCTACTGGCAGACACATTTCTATGCCTTCGGGCGTTTGTGA

Upstream 100 bases:

>100_bases
CGAGGATACCGGACAGGACAGCCCTTCGGGCCATGATGGTCTGAAGTCCAAAAGCGGTAAGTTTCAAGAGGACAGCCGGA
AAAGCCGTCCCTCTGACCGC

Downstream 100 bases:

>100_bases
GCCAAAGGAAAGGAGTCCTTGCATGAACAAGATCGACAAGCTCGATAAGGAACTGGAAAAAGCCCGGGAGAAGGCTGCCG
AGTGGCAGGCCAAAATCCGG

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MRQEDEADGPQDTGKAQEPEGSAEKVGSKKGKYQKAQAKAEHTGEKLGKAREKLDKTEAKRAAKKPPGLAKKAVRGARTE
AWFYVHNKIHEVEHENVGVEGAHKSELAAEAGARKLTRYAKRRWREHPARKVAKWERKDIKARANVDFQKMASEHPELAS
NPLSRVQQKWKLKRRYSKEAKAAAKQGAKAAKKTAAASGTATRRAAQFVTRHPVAVLVLLLLLLLCFLVSAVSSIFPTLG
SGLANALSGTSYASEDTDLLGVDEDYTALENELAQTVANIESTHPGYDEYRYSVDEIGHNPYELASYFSAKYHVYFREQV
QDELREIFEAQYELTLTEEVEIRYRTETSTDPETGETTTEEVPYEYYILNVTLTNKTLPAVILPRLNEQQREIYTVMQQL
KGNKPYLWEGIYNGGEDTGPSYEIPGEALDDPAFAALMEEATKYIGWPYVWGGSSPSTSFDCSGFVCWVYTASGVHNLPR
TTAQGIYNQCAIIFPSEAKPGDIIFFTGTYDSPGPVSHVGIYVGDGMMLHCGSPIQYANINSSYWQTHFYAFGRL

Sequences:

>Translated_555_residues
MRQEDEADGPQDTGKAQEPEGSAEKVGSKKGKYQKAQAKAEHTGEKLGKAREKLDKTEAKRAAKKPPGLAKKAVRGARTE
AWFYVHNKIHEVEHENVGVEGAHKSELAAEAGARKLTRYAKRRWREHPARKVAKWERKDIKARANVDFQKMASEHPELAS
NPLSRVQQKWKLKRRYSKEAKAAAKQGAKAAKKTAAASGTATRRAAQFVTRHPVAVLVLLLLLLLCFLVSAVSSIFPTLG
SGLANALSGTSYASEDTDLLGVDEDYTALENELAQTVANIESTHPGYDEYRYSVDEIGHNPYELASYFSAKYHVYFREQV
QDELREIFEAQYELTLTEEVEIRYRTETSTDPETGETTTEEVPYEYYILNVTLTNKTLPAVILPRLNEQQREIYTVMQQL
KGNKPYLWEGIYNGGEDTGPSYEIPGEALDDPAFAALMEEATKYIGWPYVWGGSSPSTSFDCSGFVCWVYTASGVHNLPR
TTAQGIYNQCAIIFPSEAKPGDIIFFTGTYDSPGPVSHVGIYVGDGMMLHCGSPIQYANINSSYWQTHFYAFGRL
>Mature_555_residues
MRQEDEADGPQDTGKAQEPEGSAEKVGSKKGKYQKAQAKAEHTGEKLGKAREKLDKTEAKRAAKKPPGLAKKAVRGARTE
AWFYVHNKIHEVEHENVGVEGAHKSELAAEAGARKLTRYAKRRWREHPARKVAKWERKDIKARANVDFQKMASEHPELAS
NPLSRVQQKWKLKRRYSKEAKAAAKQGAKAAKKTAAASGTATRRAAQFVTRHPVAVLVLLLLLLLCFLVSAVSSIFPTLG
SGLANALSGTSYASEDTDLLGVDEDYTALENELAQTVANIESTHPGYDEYRYSVDEIGHNPYELASYFSAKYHVYFREQV
QDELREIFEAQYELTLTEEVEIRYRTETSTDPETGETTTEEVPYEYYILNVTLTNKTLPAVILPRLNEQQREIYTVMQQL
KGNKPYLWEGIYNGGEDTGPSYEIPGEALDDPAFAALMEEATKYIGWPYVWGGSSPSTSFDCSGFVCWVYTASGVHNLPR
TTAQGIYNQCAIIFPSEAKPGDIIFFTGTYDSPGPVSHVGIYVGDGMMLHCGSPIQYANINSSYWQTHFYAFGRL

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=123, Percent_Identity=39.8373983739837, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1786421, Length=115, Percent_Identity=33.9130434782609, Blast_Score=78, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60; PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 61915; Mature: 61915

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQEDEADGPQDTGKAQEPEGSAEKVGSKKGKYQKAQAKAEHTGEKLGKAREKLDKTEAK
CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAAKKPPGLAKKAVRGARTEAWFYVHNKIHEVEHENVGVEGAHKSELAAEAGARKLTRYA
HHHCCCCCHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
KRRWREHPARKVAKWERKDIKARANVDFQKMASEHPELASNPLSRVQQKWKLKRRYSKEA
HHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHH
KAAAKQGAKAAKKTAAASGTATRRAAQFVTRHPVAVLVLLLLLLLCFLVSAVSSIFPTLG
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGLANALSGTSYASEDTDLLGVDEDYTALENELAQTVANIESTHPGYDEYRYSVDEIGHN
HHHHHHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
PYELASYFSAKYHVYFREQVQDELREIFEAQYELTLTEEVEIRYRTETSTDPETGETTTE
HHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCCCCCCCCCCCCC
EVPYEYYILNVTLTNKTLPAVILPRLNEQQREIYTVMQQLKGNKPYLWEGIYNGGEDTGP
CCCEEEEEEEEEEECCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
SYEIPGEALDDPAFAALMEEATKYIGWPYVWGGSSPSTSFDCSGFVCWVYTASGVHNLPR
CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCH
TTAQGIYNQCAIIFPSEAKPGDIIFFTGTYDSPGPVSHVGIYVGDGMMLHCGSPIQYANI
HHHHHHHHCEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEEECCCEEEECCCCEEEECC
NSSYWQTHFYAFGRL
CCHHHHHHHEEECCC
>Mature Secondary Structure
MRQEDEADGPQDTGKAQEPEGSAEKVGSKKGKYQKAQAKAEHTGEKLGKAREKLDKTEAK
CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAAKKPPGLAKKAVRGARTEAWFYVHNKIHEVEHENVGVEGAHKSELAAEAGARKLTRYA
HHHCCCCCHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
KRRWREHPARKVAKWERKDIKARANVDFQKMASEHPELASNPLSRVQQKWKLKRRYSKEA
HHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHH
KAAAKQGAKAAKKTAAASGTATRRAAQFVTRHPVAVLVLLLLLLLCFLVSAVSSIFPTLG
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGLANALSGTSYASEDTDLLGVDEDYTALENELAQTVANIESTHPGYDEYRYSVDEIGHN
HHHHHHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
PYELASYFSAKYHVYFREQVQDELREIFEAQYELTLTEEVEIRYRTETSTDPETGETTTE
HHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCCCCCCCCCCCCC
EVPYEYYILNVTLTNKTLPAVILPRLNEQQREIYTVMQQLKGNKPYLWEGIYNGGEDTGP
CCCEEEEEEEEEEECCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
SYEIPGEALDDPAFAALMEEATKYIGWPYVWGGSSPSTSFDCSGFVCWVYTASGVHNLPR
CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCH
TTAQGIYNQCAIIFPSEAKPGDIIFFTGTYDSPGPVSHVGIYVGDGMMLHCGSPIQYANI
HHHHHHHHCEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEEECCCEEEECCCCEEEECC
NSSYWQTHFYAFGRL
CCHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]