Click here to switch to the map view.

The map label for this gene is yccH [H]

Identifier: 238924872

GI number: 238924872

Start: 2395096

End: 2395824

Strand: Direct

Name: yccH [H]

Synonym: EUBREC_2523

Alternate gene names: 238924872

Gene position: 2395096-2395824 (Clockwise)

Preceding gene: 238924864

Following gene: 238924873

Centisome position: 69.43

GC content: 45.13

Gene sequence:

>729_bases
ATGCCACAAACACTTAATATAGCTGTATGCGAGGACGAAGCTGCAGAGACCTTGCTGCTTTGTGATATTCTCAACCACAG
CGATATCCAAAATACATACACTGTCTTTACTGATGCAGATTCTTTTCTTGCCTCATATGAGTACGGAAAGTATGACCTGC
TGCTCATGGATATATACATGAAAGATTCCATGACCGGCATCGAGGCAGTCTCCATAATCCGCGAGACAGATGCCGATATC
CCGGTTGCTTTCATCACAACAAGCACGGAGCATGCCTTGGAAAGCTACAGGCTGTCTGCCATCGGCTATATCGAAAAGCC
GGTTTCTGCAGCTGAGCTAAGTAACATTCTTCACCTTGCCATGCTGAAGAAATCCGATGCCCCATCTCTTTATGTGAAGA
GAAACAAGAGTATGGAGAGGCTTGCCCTTTCTGATATCATGTACATAGAGCAGAGAGCCAGGCAGATTTTCATACATTTA
AAAGAAAATGAGGAAATCAGCTGCTATGAGAAGCTTTCAGAGCTTTCAGATCAGCTGCCCGCTGAGCTGTTTTTTCTGCC
GCACAAAAGCTACGCGGTAAACCTGTCGTATGTCACACGCATTGATACTTCACTCAAATGCTTCGTGATGGCCGATGACA
CAAATATCCCTATCAAGAGAGAGCTCTCCGGCAAAGCCAAAAAAGCTCTGGAGAGATACTACTTTGAGCACACCAGAGGG
CTTAAATAA

Upstream 100 bases:

>100_bases
TATTAGCATTTCGGATATTTAATAGCAATATTTATTTGATATTTATTCCATATTATATTATGATTATTTATAATCATTCA
CATTCTACAGAGGAATAAAC

Downstream 100 bases:

>100_bases
GGCACTTTCCTATTGATTTGATATGAGCTAGACTGTCAAAAGTAATACACTGCAAGGAGCCCGGATTATGAAAAAAATTA
GCGCTATACGAAATATTCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MPQTLNIAVCEDEAAETLLLCDILNHSDIQNTYTVFTDADSFLASYEYGKYDLLLMDIYMKDSMTGIEAVSIIRETDADI
PVAFITTSTEHALESYRLSAIGYIEKPVSAAELSNILHLAMLKKSDAPSLYVKRNKSMERLALSDIMYIEQRARQIFIHL
KENEEISCYEKLSELSDQLPAELFFLPHKSYAVNLSYVTRIDTSLKCFVMADDTNIPIKRELSGKAKKALERYYFEHTRG
LK

Sequences:

>Translated_242_residues
MPQTLNIAVCEDEAAETLLLCDILNHSDIQNTYTVFTDADSFLASYEYGKYDLLLMDIYMKDSMTGIEAVSIIRETDADI
PVAFITTSTEHALESYRLSAIGYIEKPVSAAELSNILHLAMLKKSDAPSLYVKRNKSMERLALSDIMYIEQRARQIFIHL
KENEEISCYEKLSELSDQLPAELFFLPHKSYAVNLSYVTRIDTSLKCFVMADDTNIPIKRELSGKAKKALERYYFEHTRG
LK
>Mature_241_residues
PQTLNIAVCEDEAAETLLLCDILNHSDIQNTYTVFTDADSFLASYEYGKYDLLLMDIYMKDSMTGIEAVSIIRETDADIP
VAFITTSTEHALESYRLSAIGYIEKPVSAAELSNILHLAMLKKSDAPSLYVKRNKSMERLALSDIMYIEQRARQIFIHLK
ENEEISCYEKLSELSDQLPAELFFLPHKSYAVNLSYVTRIDTSLKCFVMADDTNIPIKRELSGKAKKALERYYFEHTRGL
K

Specific function: Could be member of the two-component regulatory system yccG/yccH [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=213, Percent_Identity=25.8215962441315, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27623; Mature: 27492

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQTLNIAVCEDEAAETLLLCDILNHSDIQNTYTVFTDADSFLASYEYGKYDLLLMDIYM
CCCEEEEEEECCCCHHEEEEEEHHCCCCCCCEEEEEECCHHHHHHCCCCCEEEEEEEEEE
KDSMTGIEAVSIIRETDADIPVAFITTSTEHALESYRLSAIGYIEKPVSAAELSNILHLA
CCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHEEHHHCCCCHHHHHHHHHHH
MLKKSDAPSLYVKRNKSMERLALSDIMYIEQRARQIFIHLKENEEISCYEKLSELSDQLP
HHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHCC
AELFFLPHKSYAVNLSYVTRIDTSLKCFVMADDTNIPIKRELSGKAKKALERYYFEHTRG
CEEEEECCCCEEEEEEEEEEECCCEEEEEEECCCCCCEECCCCCHHHHHHHHHHHHHHCC
LK
CC
>Mature Secondary Structure 
PQTLNIAVCEDEAAETLLLCDILNHSDIQNTYTVFTDADSFLASYEYGKYDLLLMDIYM
CCEEEEEEECCCCHHEEEEEEHHCCCCCCCEEEEEECCHHHHHHCCCCCEEEEEEEEEE
KDSMTGIEAVSIIRETDADIPVAFITTSTEHALESYRLSAIGYIEKPVSAAELSNILHLA
CCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHEEHHHCCCCHHHHHHHHHHH
MLKKSDAPSLYVKRNKSMERLALSDIMYIEQRARQIFIHLKENEEISCYEKLSELSDQLP
HHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHCC
AELFFLPHKSYAVNLSYVTRIDTSLKCFVMADDTNIPIKRELSGKAKKALERYYFEHTRG
CEEEEECCCCEEEEEEEEEEECCCEEEEEEECCCCCCEECCCCCHHHHHHHHHHHHHHCC
LK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9106203; 9274031; 9384377 [H]