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The map label for this gene is yulB [H]

Identifier: 238924812

GI number: 238924812

Start: 2330307

End: 2331236

Strand: Direct

Name: yulB [H]

Synonym: EUBREC_2463

Alternate gene names: 238924812

Gene position: 2330307-2331236 (Clockwise)

Preceding gene: 238924804

Following gene: 238924832

Centisome position: 67.55

GC content: 42.04

Gene sequence:

>930_bases
ATGACATCAAATAAAAAAACACAAGCAATCGAAAACACTGGCTTTATTTACTTATTTGAGTTATTATATATTTATGCAAT
GCTTTGTGATAAAAATATGTACGCAAAAATACAACAGAAATCAAAAGAAAGAGGAAAATCTATGCTGCAATTAGAAAGAC
AACAAAAGATTCTCGATTATTTAAAAGAAAACCGCAAGGCCACCACCAATGAGCTCAGCGAGCTGCTTGGTGTATCGACC
ACAACAATAAGAACAGATTTAAACCAGATGGATAAGGAAAAGCTTCTGACAAAGACTCACGGCGGTGCTATCTACAAGGA
TAAAACCCATGACATGACTGATTTAACCTCGAGGGCCTACCTGTTCCATGACCGCGCCCTGGAAAACAAGGAAGCTAAAG
AGGAGATTGCAAACGAGGCGATAAAGCTCGTAAGTGACCATATGTGTATATTCCTTGATGCCAGCTCCACAGCCTACACT
CTCGGCATGAAGCTTTCAGGCTTTACAGAGCTGACCGTCATCACCAATGGCATCAATCTGGCTTTAGAGCTAAAGGATAT
CCCGGGTGTCACAGTCATCCTGACAGGCGGTATCGTAACCAGTGCATCCGCTTCCATAGAAGGACTGCTTGGCGCTGATT
TACTCAAAAAGATACACACAGATATCGCGTTCGTGTCAGCAAGAGGCTTCTCTGTAGAAGACGGACTGACTGATTTCAGT
ATATACGAGGCTGATTTAAAGCACATGTGTATCAAGGCTTCCGCTAAAACTGTGGCTCTTGTAGACCACACCAAGTTTGA
TACCACATCCATATCAAGCTATGCATCGCTTGATGACATCAATATGGTAATCACCGACTCCGGTATCTCTCCTGAGACAG
CAGATATATATGAGAAGGCAGGCACTGATATTGTTATATCCGGAATATAA

Upstream 100 bases:

>100_bases
TATAATTTGTGTTTGCTTTTATTTGTTGATATAAATATAACACTTTAAAAGAAAAAATGCAATAGCAAAAGCAAATAAAA
GTAAAAATAAATATAATCAA

Downstream 100 bases:

>100_bases
ATGAGACAATATAGCCATATAAAAGTATAAGTACAAATATAACTATAACTGTATATATAGATCCATCAAAAATGACACGC
AACGTTTTACGCTGCGTGTC

Product: DeoR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MTSNKKTQAIENTGFIYLFELLYIYAMLCDKNMYAKIQQKSKERGKSMLQLERQQKILDYLKENRKATTNELSELLGVST
TTIRTDLNQMDKEKLLTKTHGGAIYKDKTHDMTDLTSRAYLFHDRALENKEAKEEIANEAIKLVSDHMCIFLDASSTAYT
LGMKLSGFTELTVITNGINLALELKDIPGVTVILTGGIVTSASASIEGLLGADLLKKIHTDIAFVSARGFSVEDGLTDFS
IYEADLKHMCIKASAKTVALVDHTKFDTTSISSYASLDDINMVITDSGISPETADIYEKAGTDIVISGI

Sequences:

>Translated_309_residues
MTSNKKTQAIENTGFIYLFELLYIYAMLCDKNMYAKIQQKSKERGKSMLQLERQQKILDYLKENRKATTNELSELLGVST
TTIRTDLNQMDKEKLLTKTHGGAIYKDKTHDMTDLTSRAYLFHDRALENKEAKEEIANEAIKLVSDHMCIFLDASSTAYT
LGMKLSGFTELTVITNGINLALELKDIPGVTVILTGGIVTSASASIEGLLGADLLKKIHTDIAFVSARGFSVEDGLTDFS
IYEADLKHMCIKASAKTVALVDHTKFDTTSISSYASLDDINMVITDSGISPETADIYEKAGTDIVISGI
>Mature_308_residues
TSNKKTQAIENTGFIYLFELLYIYAMLCDKNMYAKIQQKSKERGKSMLQLERQQKILDYLKENRKATTNELSELLGVSTT
TIRTDLNQMDKEKLLTKTHGGAIYKDKTHDMTDLTSRAYLFHDRALENKEAKEEIANEAIKLVSDHMCIFLDASSTAYTL
GMKLSGFTELTVITNGINLALELKDIPGVTVILTGGIVTSASASIEGLLGADLLKKIHTDIAFVSARGFSVEDGLTDFSI
YEADLKHMCIKASAKTVALVDHTKFDTTSISSYASLDDINMVITDSGISPETADIYEKAGTDIVISGI

Specific function: Putative Transcriptional Regulator For The Sgcreaqcx Region. [C]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790753, Length=262, Percent_Identity=28.6259541984733, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1789519, Length=257, Percent_Identity=27.2373540856031, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1789059, Length=262, Percent_Identity=29.3893129770992, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788069, Length=241, Percent_Identity=29.4605809128631, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789829, Length=240, Percent_Identity=27.5, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789170, Length=235, Percent_Identity=31.063829787234, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI226510968, Length=252, Percent_Identity=29.7619047619048, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787540, Length=241, Percent_Identity=30.7053941908714, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787063, Length=241, Percent_Identity=29.045643153527, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790635, Length=265, Percent_Identity=27.1698113207547, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082344, Length=235, Percent_Identity=25.531914893617, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 34082; Mature: 33951

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSNKKTQAIENTGFIYLFELLYIYAMLCDKNMYAKIQQKSKERGKSMLQLERQQKILDY
CCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKENRKATTNELSELLGVSTTTIRTDLNQMDKEKLLTKTHGGAIYKDKTHDMTDLTSRAY
HHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
LFHDRALENKEAKEEIANEAIKLVSDHMCIFLDASSTAYTLGMKLSGFTELTVITNGINL
HHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEEECCCEEEEEEECCCEE
ALELKDIPGVTVILTGGIVTSASASIEGLLGADLLKKIHTDIAFVSARGFSVEDGLTDFS
EEEEECCCCEEEEEECCEEECCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHH
IYEADLKHMCIKASAKTVALVDHTKFDTTSISSYASLDDINMVITDSGISPETADIYEKA
HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHC
GTDIVISGI
CCEEEEECC
>Mature Secondary Structure 
TSNKKTQAIENTGFIYLFELLYIYAMLCDKNMYAKIQQKSKERGKSMLQLERQQKILDY
CCCCCHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKENRKATTNELSELLGVSTTTIRTDLNQMDKEKLLTKTHGGAIYKDKTHDMTDLTSRAY
HHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
LFHDRALENKEAKEEIANEAIKLVSDHMCIFLDASSTAYTLGMKLSGFTELTVITNGINL
HHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEEECCCEEEEEEECCCEE
ALELKDIPGVTVILTGGIVTSASASIEGLLGADLLKKIHTDIAFVSARGFSVEDGLTDFS
EEEEECCCCEEEEEECCEEECCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHH
IYEADLKHMCIKASAKTVALVDHTKFDTTSISSYASLDDINMVITDSGISPETADIYEKA
HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHC
GTDIVISGI
CCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]