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The map label for this gene is ytrA [H]

Identifier: 238924787

GI number: 238924787

Start: 2308476

End: 2308859

Strand: Direct

Name: ytrA [H]

Synonym: EUBREC_2438

Alternate gene names: 238924787

Gene position: 2308476-2308859 (Clockwise)

Preceding gene: 238924777

Following gene: 238924788

Centisome position: 66.92

GC content: 44.01

Gene sequence:

>384_bases
ATGATAATAGAACTCGACATGTCAAGCAGTACACCGATATACGTACAGCTTAGAAACCAGATTGTAAAGGGAATAGGCAA
AGGTGAGCTAAAGACCGGTGAAAAGCTTCCAACCGTGCGCCAGCTTGCAAGCGATGCCGGTGTAAACACAATGACGGTCA
ATAAAGCCTATCAGATTTTGAAAAATGAGGGATTTATCCGTACAGACAGACGGCTCGGCGCTTTTGTGTCAGAATCCATC
GCAGATGATACCGATTTCACTGAAAAGCTGGAATCAGAGCTTGAGCTTTTAAGTGCTGAGGCCTGTCTCACCGGAATGAG
CCGTGAGGAATTTTTATCAATGTGTGATAAACTGTATTCACAAATGAAACCATGTACCGCTTAG

Upstream 100 bases:

>100_bases
TATATCACTTACAAGTTTTGTCAGATTACAGCCTGCTCATAAATATTGATGCATTTCAAACAGGCTATGACATATAAACA
GTAAGATACAGGAGGTTCAC

Downstream 100 bases:

>100_bases
CAGAGGAGGCAGACTATGGAAATTATGATGTTTATTATCTTTATAATTACAAATCTTATTATCATACTATGTATGCAATT
TGCGTACACACACGCCTATA

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MIIELDMSSSTPIYVQLRNQIVKGIGKGELKTGEKLPTVRQLASDAGVNTMTVNKAYQILKNEGFIRTDRRLGAFVSESI
ADDTDFTEKLESELELLSAEACLTGMSREEFLSMCDKLYSQMKPCTA

Sequences:

>Translated_127_residues
MIIELDMSSSTPIYVQLRNQIVKGIGKGELKTGEKLPTVRQLASDAGVNTMTVNKAYQILKNEGFIRTDRRLGAFVSESI
ADDTDFTEKLESELELLSAEACLTGMSREEFLSMCDKLYSQMKPCTA
>Mature_127_residues
MIIELDMSSSTPIYVQLRNQIVKGIGKGELKTGEKLPTVRQLASDAGVNTMTVNKAYQILKNEGFIRTDRRLGAFVSESI
ADDTDFTEKLESELELLSAEACLTGMSREEFLSMCDKLYSQMKPCTA

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14105; Mature: 14105

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIELDMSSSTPIYVQLRNQIVKGIGKGELKTGEKLPTVRQLASDAGVNTMTVNKAYQIL
CEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHH
KNEGFIRTDRRLGAFVSESIADDTDFTEKLESELELLSAEACLTGMSREEFLSMCDKLYS
HCCCCEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
QMKPCTA
HCCCCCC
>Mature Secondary Structure
MIIELDMSSSTPIYVQLRNQIVKGIGKGELKTGEKLPTVRQLASDAGVNTMTVNKAYQIL
CEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHH
KNEGFIRTDRRLGAFVSESIADDTDFTEKLESELELLSAEACLTGMSREEFLSMCDKLYS
HCCCCEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
QMKPCTA
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]