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The map label for this gene is ydeC [H]

Identifier: 238924776

GI number: 238924776

Start: 2299326

End: 2300201

Strand: Direct

Name: ydeC [H]

Synonym: EUBREC_2427

Alternate gene names: 238924776

Gene position: 2299326-2300201 (Clockwise)

Preceding gene: 238924774

Following gene: 238924777

Centisome position: 66.65

GC content: 43.38

Gene sequence:

>876_bases
ATGAATATATTAGAATATGAAAATTATCACGAAGACAAAACACATGTGGAGCTTACGTTCCCATACAATACCTACCTGTG
CTCTATTCCTCTTGATTTTTCCGGAGTTCCGCTGCACTGGCATGATGACATGGAGCTTATCTATATAAAGAAGGGCTGCG
GTCATATATCTGTGGATTTTAAGGAGTACCATGTCACAGCGCCAAGCCTTGTGCTGATTCTGCCGGGACAGCTTCACTCT
ATAGACCAGTATATGGATGAATCGATGGAGTACGAAAATATCATATTTTCCCTGTCGATGCTGCTTCCCGGAAAGTACGA
TTACACCAAGGAGGATTTTCTTACCCCTCTCTTAGCCGGCAGATTCACAGTTCCGACGGTTTTTACACCGGTGTATCCAT
ACTACGAGGATGTCGTGGCTCCAATAGATGCATGCGATGAGATTTGCAAGACGATGCCGCAGGGCTATCAGCTTTATATA
AAGAGCAAGCTCTACGAATTCTTTTTTGTGCTTGATAACCGCTGCCGTAATCTGACAAAGCCACTAAAAAGCAAAAAGAC
TCTTGATAAGATGAAGGTTGTGCTCAAATATGTGGAAAATAATTATGCCGACAAAATCTCTATCGCTGATATCGCTGATG
TAGCCGGGTTTTCCGAGTCTCATTTTATGAGGTATTTTAAAGAAACCATGGGCACATCGTTTGTTGACTATTTAAAGGAC
TACCGCCTGACCATGGCTGCGAGACTTTTGCAAAGCTCAGACAGCTCGGTGCTTTCTATTTCCGGTGAAGTGGGGTTTGA
AAGCCTGTCATATTTTAACAGAGCCTTCAAAAAGCACTATGGCATGACACCTCTGCAGTATCGCAAGGGCAGTTGA

Upstream 100 bases:

>100_bases
CTGCACAATTCTTGCAGTATACAGTCGAAAACTTGCACAATCCTATCATTTTTCGGTATTTTTAGTGGCTTTTTAAGAAA
TAATATGCTAAAATATCATC

Downstream 100 bases:

>100_bases
CACCACTCTAGACAGTTACAATACAATATTTCATAAATAAACGATGGAAAATAATCATGAAAAAAAATACATACATAAAA
ATGACTGCCCCATTCCGTGA

Product: L-rhamnose operon transcriptional activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MNILEYENYHEDKTHVELTFPYNTYLCSIPLDFSGVPLHWHDDMELIYIKKGCGHISVDFKEYHVTAPSLVLILPGQLHS
IDQYMDESMEYENIIFSLSMLLPGKYDYTKEDFLTPLLAGRFTVPTVFTPVYPYYEDVVAPIDACDEICKTMPQGYQLYI
KSKLYEFFFVLDNRCRNLTKPLKSKKTLDKMKVVLKYVENNYADKISIADIADVAGFSESHFMRYFKETMGTSFVDYLKD
YRLTMAARLLQSSDSSVLSISGEVGFESLSYFNRAFKKHYGMTPLQYRKGS

Sequences:

>Translated_291_residues
MNILEYENYHEDKTHVELTFPYNTYLCSIPLDFSGVPLHWHDDMELIYIKKGCGHISVDFKEYHVTAPSLVLILPGQLHS
IDQYMDESMEYENIIFSLSMLLPGKYDYTKEDFLTPLLAGRFTVPTVFTPVYPYYEDVVAPIDACDEICKTMPQGYQLYI
KSKLYEFFFVLDNRCRNLTKPLKSKKTLDKMKVVLKYVENNYADKISIADIADVAGFSESHFMRYFKETMGTSFVDYLKD
YRLTMAARLLQSSDSSVLSISGEVGFESLSYFNRAFKKHYGMTPLQYRKGS
>Mature_291_residues
MNILEYENYHEDKTHVELTFPYNTYLCSIPLDFSGVPLHWHDDMELIYIKKGCGHISVDFKEYHVTAPSLVLILPGQLHS
IDQYMDESMEYENIIFSLSMLLPGKYDYTKEDFLTPLLAGRFTVPTVFTPVYPYYEDVVAPIDACDEICKTMPQGYQLYI
KSKLYEFFFVLDNRCRNLTKPLKSKKTLDKMKVVLKYVENNYADKISIADIADVAGFSESHFMRYFKETMGTSFVDYLKD
YRLTMAARLLQSSDSSVLSISGEVGFESLSYFNRAFKKHYGMTPLQYRKGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=119, Percent_Identity=34.453781512605, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI87081928, Length=107, Percent_Identity=28.0373831775701, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790559, Length=98, Percent_Identity=32.6530612244898, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33800; Mature: 33800

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILEYENYHEDKTHVELTFPYNTYLCSIPLDFSGVPLHWHDDMELIYIKKGCGHISVDF
CCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCEEECCCCEEEEEECCCCEEEEEH
KEYHVTAPSLVLILPGQLHSIDQYMDESMEYENIIFSLSMLLPGKYDYTKEDFLTPLLAG
HHEEECCCEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
RFTVPTVFTPVYPYYEDVVAPIDACDEICKTMPQGYQLYIKSKLYEFFFVLDNRCRNLTK
CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
PLKSKKTLDKMKVVLKYVENNYADKISIADIADVAGFSESHFMRYFKETMGTSFVDYLKD
HHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHH
YRLTMAARLLQSSDSSVLSISGEVGFESLSYFNRAFKKHYGMTPLQYRKGS
HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNILEYENYHEDKTHVELTFPYNTYLCSIPLDFSGVPLHWHDDMELIYIKKGCGHISVDF
CCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCEEECCCCEEEEEECCCCEEEEEH
KEYHVTAPSLVLILPGQLHSIDQYMDESMEYENIIFSLSMLLPGKYDYTKEDFLTPLLAG
HHEEECCCEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
RFTVPTVFTPVYPYYEDVVAPIDACDEICKTMPQGYQLYIKSKLYEFFFVLDNRCRNLTK
CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
PLKSKKTLDKMKVVLKYVENNYADKISIADIADVAGFSESHFMRYFKETMGTSFVDYLKD
HHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHH
YRLTMAARLLQSSDSSVLSISGEVGFESLSYFNRAFKKHYGMTPLQYRKGS
HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]