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The map label for this gene is cspC [H]

Identifier: 238924737

GI number: 238924737

Start: 2253032

End: 2253235

Strand: Direct

Name: cspC [H]

Synonym: EUBREC_2388

Alternate gene names: 238924737

Gene position: 2253032-2253235 (Clockwise)

Preceding gene: 238924736

Following gene: 238924744

Centisome position: 65.31

GC content: 43.14

Gene sequence:

>204_bases
ATGAGCAAAGGTACAGTAAAATGGTTCAATAACCAAAAAGGTTACGGATTCATCACAGCCGAGGACGGAAAGGATGTATT
CGTACATTTCTCAGGACTTAACATGGAGGGCTTCAAAACTCTCGAGGAAGGTGCAGCAGTAGAGTTCGATATCACTGATG
GCGCTAAAGGTCCACAGGCAGTTAACGTTGAGGTAGTTAAATAA

Upstream 100 bases:

>100_bases
TTTAAAGAACTTTGACTTTATTGCTTTACATCTTAAACCTGTTATGCTATTCTAACGTTAGTTGCGTAAGCAGCATTATT
ATTATTTGGAGGTACTTTCG

Downstream 100 bases:

>100_bases
TTTTGACCCCTCAGGCAATCTAGTTTCTATGTACCTTTTTCTTTATTATATATTTAGGTAAAATTATAGTTACAAAAATG
TTAATTGGGGAATAAGATAT

Product: putative cold-shock DNA-binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MSKGTVKWFNNQKGYGFITAEDGKDVFVHFSGLNMEGFKTLEEGAAVEFDITDGAKGPQAVNVEVVK

Sequences:

>Translated_67_residues
MSKGTVKWFNNQKGYGFITAEDGKDVFVHFSGLNMEGFKTLEEGAAVEFDITDGAKGPQAVNVEVVK
>Mature_66_residues
SKGTVKWFNNQKGYGFITAEDGKDVFVHFSGLNMEGFKTLEEGAAVEFDITDGAKGPQAVNVEVVK

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=62, Percent_Identity=70.9677419354839, Blast_Score=89, Evalue=4e-20,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=66.1538461538461, Blast_Score=85, Evalue=1e-18,
Organism=Escherichia coli, GI1789979, Length=61, Percent_Identity=62.2950819672131, Blast_Score=77, Evalue=3e-16,
Organism=Escherichia coli, GI1787834, Length=61, Percent_Identity=62.2950819672131, Blast_Score=75, Evalue=8e-16,
Organism=Escherichia coli, GI1787107, Length=69, Percent_Identity=53.6231884057971, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=57.3770491803279, Blast_Score=72, Evalue=5e-15,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=57.1428571428571, Blast_Score=72, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7285; Mature: 7154

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGTVKWFNNQKGYGFITAEDGKDVFVHFSGLNMEGFKTLEEGAAVEFDITDGAKGPQA
CCCCEEEEECCCCCCEEEEECCCCEEEEEEECCCCCCCEECCCCCEEEEEECCCCCCCEE
VNVEVVK
EEEEEEC
>Mature Secondary Structure 
SKGTVKWFNNQKGYGFITAEDGKDVFVHFSGLNMEGFKTLEEGAAVEFDITDGAKGPQA
CCCEEEEECCCCCCEEEEECCCCEEEEEEECCCCCCCEECCCCCEEEEEECCCCCCCEE
VNVEVVK
EEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]