Click here to switch to the map view.

The map label for this gene is 238924372

Identifier: 238924372

GI number: 238924372

Start: 1902215

End: 1902652

Strand: Direct

Name: 238924372

Synonym: EUBREC_2013

Alternate gene names: NA

Gene position: 1902215-1902652 (Clockwise)

Preceding gene: 238924370

Following gene: 238924373

Centisome position: 55.14

GC content: 36.3

Gene sequence:

>438_bases
ATGAAAGTAAGTATTGAACTTTCCCCTGAATACAGCGAACCATATGCCATCATATATGCAGATAAAATCACTGACAACAT
CCAGCGTACCCTTGATATATTCGGTTCAAATGAAAGCCCCATTACAGCTTTTAAAAACGGAAATGATATTGTCATTTTAC
AGCCAAAAGAAATATACATGGTAAGGGTAGAAAACAAAGATACTATTATTTATGGCAAAGAACACCGCTACCGTTCCCGA
AAAAGACTGTACGAAATGCAACAGCAGCTTGGTGCCGGATTTATGCAAATTTCAAAATCAACTTTGGTCAATCTGTCTTA
TATGAGCAATGTCGAGGCTGGTTTTAGCGGCACTCTTCTTTTGAAACTAAAAAACGGATGTAAGGATTACGTATCAAGAA
AATATCTGCCTGAGTTTAAAAAATATCTGGGATTATAG

Upstream 100 bases:

>100_bases
TTTATTTGCAAACCTTCAATAAATCAAGGTTTTAAAAGAATTTTAGAACAATAAAATGGGTAGTTTTTGACACTACCCCA
AAAAGAAAGGAGGATTTTAC

Downstream 100 bases:

>100_bases
GAGGACAAAAATGAGAGAAACTATGAAAAATTTGATTAAAAACACTATAACCAGCATTGGTATAGCATTAACCGTTTTCT
GCGTTACAGGAATGGTATTT

Product: hypothetical protein

Products: NA

Alternate protein names: Response Regulator; Response Regulator Of Lytr/Algr Family; LytTr Family Transcriptional Regulator; Response Regulator LytTR Family; Transcriptional Regulator; Transcriptional Regulator LytR/AlgR Family; Response Regulator-Related Protein; Response Regulator Of LytR/AlgR Family Protein; Transcriptional Regulator LytR Family; Ypothetical Protein SMU.

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MKVSIELSPEYSEPYAIIYADKITDNIQRTLDIFGSNESPITAFKNGNDIVILQPKEIYMVRVENKDTIIYGKEHRYRSR
KRLYEMQQQLGAGFMQISKSTLVNLSYMSNVEAGFSGTLLLKLKNGCKDYVSRKYLPEFKKYLGL

Sequences:

>Translated_145_residues
MKVSIELSPEYSEPYAIIYADKITDNIQRTLDIFGSNESPITAFKNGNDIVILQPKEIYMVRVENKDTIIYGKEHRYRSR
KRLYEMQQQLGAGFMQISKSTLVNLSYMSNVEAGFSGTLLLKLKNGCKDYVSRKYLPEFKKYLGL
>Mature_145_residues
MKVSIELSPEYSEPYAIIYADKITDNIQRTLDIFGSNESPITAFKNGNDIVILQPKEIYMVRVENKDTIIYGKEHRYRSR
KRLYEMQQQLGAGFMQISKSTLVNLSYMSNVEAGFSGTLLLKLKNGCKDYVSRKYLPEFKKYLGL

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16752; Mature: 16752

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSIELSPEYSEPYAIIYADKITDNIQRTLDIFGSNESPITAFKNGNDIVILQPKEIYM
CEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCEEEE
VRVENKDTIIYGKEHRYRSRKRLYEMQQQLGAGFMQISKSTLVNLSYMSNVEAGFSGTLL
EEECCCCEEEECCHHHHHHHHHHHHHHHHHCCHHEEECHHHEEEEHHHCCCCCCCCCEEE
LKLKNGCKDYVSRKYLPEFKKYLGL
EEECCCHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure
MKVSIELSPEYSEPYAIIYADKITDNIQRTLDIFGSNESPITAFKNGNDIVILQPKEIYM
CEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCEEEE
VRVENKDTIIYGKEHRYRSRKRLYEMQQQLGAGFMQISKSTLVNLSYMSNVEAGFSGTLL
EEECCCCEEEECCHHHHHHHHHHHHHHHHHCCHHEEECHHHEEEEHHHCCCCCCCCCEEE
LKLKNGCKDYVSRKYLPEFKKYLGL
EEECCCHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA