| Definition | Eubacterium rectale ATCC 33656, complete genome. |
|---|---|
| Accession | NC_012781 |
| Length | 3,449,685 |
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The map label for this gene is secDF [H]
Identifier: 238923392
GI number: 238923392
Start: 910084
End: 912456
Strand: Direct
Name: secDF [H]
Synonym: EUBREC_1012
Alternate gene names: 238923392
Gene position: 910084-912456 (Clockwise)
Preceding gene: 238923391
Following gene: 238923393
Centisome position: 26.38
GC content: 43.87
Gene sequence:
>2373_bases ATGGATGGTAGCAAAATGACAGGAAGGTATAAGAAAATGAAAAAAGGAAAGAGTTGGGTGATTATCCTTGTGGCAGTCAT TTGTATCGGCTTGCTGGGCTGGTATTCCACTGCAGTAATCACCGACACAAAGCAAAAGCAGGAGGCAACTGCTAATGGTG AGAGCACCAAGGATAAGGATTATCAGAATATCAAGCTTGGTCTCGACCTCTCAGGTGGTGTTTCAATCACCTACCATATC AAGGACAAGAATCCTTCAGACAAGGATGTAAATGATACTATCGCAAAGCTCGAGGAGCGTGCAGAGAGCTACACAACAGA GTACTCTGTATACAAGAGCGGGGATGACCGTATCACTGTAGAGATTCCGGGTGTTGACGACCCTAACAAGGTACTCGAGG ATCTTGGAAGTCCGGGATCACTGTACTTCATCGCCCAGTATGACAGTGACGGAAATGCCAACTATACACAGGACACATCG GCCCAGGGCGGCTACAAGCTCAACTATGATATTGACACCTTAAAGGCCAATGGTTCAGTCATCCTCGATGGTAACGATGT AAAGGATGCAAGCGCCCAGTATGACCAGTCATCATCTACATCAACCAAGGAGCCTGTTGTTTCATTAAAGCTCAAGGATA AGGCTATTGACACATGGGCAGATGCCACAAAGAAGGCAAAGGATGCAGGACAGTCAATCGGTATATACTATGATGATCAT TTCATCAGCGTTCCTACAGTAAGCGCCGTTATCTCAGATGGTAACTGTGTAATCAACGGAATGAAGGATTACGACGAGGC AACAAGCCTTGCAACATTTATCCGTGTCGGAGCCATCAACCTTCAGCTCGAGGAGTTAGAGTCAAATGTTGTTGGCGCAC AGCTCGGTGGAACAGCGCTCACAAATGCAGTAAAGGCTGCAATTATCGGAATTATCTTAATCATGATATTCATGATTGTG CTCTATGGTATACTCGGTGTGGTTGCATCTATCGGACTTGCACTCTACTCAATGCTTACAGTACTGTTTATTTACTGGTT TGAGATTACACTTACACTGCCGGGTATCGCGGGTATCATCCTTGGTATCGGTATGGCAGTAGATGCAAACGTTATCGTAT TTGCCCGTATCCGTGAGGAAATCGCAGGTGGCAAATCAGTGCTTGCTGCAGTAAATGAGGGCTACAAGAAGGCTCTTTCA GCCATCCTCGATGGACAGGTTACTACATTTATCGCAGCACTTGTGCTTATGGTGCTCGGTTCAGGTACAGTAAAGGGCTT TGCATACACACTTATGATTTCAATTATTCTGTCACTGTTTACAGCTCTTTTTATTGCAAAATACCTTACAAGAGCATTTT ACGGTGTCGGTGTCAGAGCTGAGAAGTTCTACGGCAAGGCAAAGAAGAGAAAGGTTATCAGATTTGTACAGAACAGAGTT AAATACTTTGTTATCTCAGGTGTAGTTATACTTGCAGGTATCGGCGGCATGATTTATTTCGGTGCTACAAGCGGCAATGC ATTAAACTACAGTCTTGAGTTTGTAGGTGGTACATCAACCACTGCAGACTTTGGCAAGGATTATACAGCCGCAGAGGTTG AGAAGGACATCGTGCCTTCAGTATCAAAGCTCCTTGGCAATAGTGCAGTGCAGGTTACTACAGTCCAGGGCAGCCATGAT GTCACATTAAAGACACGTACACTTTCACTCGATGAGAGACAGGATCTCGCAGCTCTTCTTGAGAAGGATTTCAATGTTGA TGCATCAACTATAGAGACTCAGAGTATCAGCTCAACAATCAGTGGAGAGATGAGAACAAACGCTGTAAAGGCAGTTATTA TTTCATGTATTTTCATGCTGTTATATATCTGGTTCAGATTCAAGGACATCAGATTTGCTTCAAGTGCTATCCTTGCGCTG GTACATGATGTGCTTGTTGTAGTCACAGCATATGCACTTATCAGAATCTCAGTCGGCAGTACGTTTATCGCATGTATACT TACAATCGTAGGTTACTCAGTCAACGATACAATCGTTATCTTTGACCGTATCCGTGAGAACCTTCACGGTATCAAGAAGT ACTCAGCAGATGAGCTTGCTGATATAGCAAACGAGTCCCTTACACAGACACTTTCACGAAGCATCAATACTTCGCTTACT ACATTTGTTATGGTATTGTTACTCTTTATCTTTGGTCATACATCAATCAGAGAGTTCTCATTACCACTCATGGTAGGTGT GCTTTGCGGAACATATTCTTCAATCTGCATCGCTACAGAGCTGTGGTATGTGATGAAGCTTTATCTGGGCAAGAGCGCCA TCAAAAAGCAGGCGGCTGCACCGGCTAAGGTTTCTAAAAAAGCTAAGAATTAA
Upstream 100 bases:
>100_bases TGATATGGCAGATGATGCACAATAATTTGAATTTGTCACGGGAAACGGATAGCGGTATTTGTGACCCGTGTGCGAATATA TTTGCCATCTGTATACCTAT
Downstream 100 bases:
>100_bases TAATTAATTTATGGCCCGGCCTTTAAAGGCTGGGCTATTGTTTTTTGTGGACTTATTAATATATGCAGATATGTTTATAT ATTTATAAATTTATGTGCGG
Product: bifunctional preprotein translocase subunit SecD/SecF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 790; Mature: 790
Protein sequence:
>790_residues MDGSKMTGRYKKMKKGKSWVIILVAVICIGLLGWYSTAVITDTKQKQEATANGESTKDKDYQNIKLGLDLSGGVSITYHI KDKNPSDKDVNDTIAKLEERAESYTTEYSVYKSGDDRITVEIPGVDDPNKVLEDLGSPGSLYFIAQYDSDGNANYTQDTS AQGGYKLNYDIDTLKANGSVILDGNDVKDASAQYDQSSSTSTKEPVVSLKLKDKAIDTWADATKKAKDAGQSIGIYYDDH FISVPTVSAVISDGNCVINGMKDYDEATSLATFIRVGAINLQLEELESNVVGAQLGGTALTNAVKAAIIGIILIMIFMIV LYGILGVVASIGLALYSMLTVLFIYWFEITLTLPGIAGIILGIGMAVDANVIVFARIREEIAGGKSVLAAVNEGYKKALS AILDGQVTTFIAALVLMVLGSGTVKGFAYTLMISIILSLFTALFIAKYLTRAFYGVGVRAEKFYGKAKKRKVIRFVQNRV KYFVISGVVILAGIGGMIYFGATSGNALNYSLEFVGGTSTTADFGKDYTAAEVEKDIVPSVSKLLGNSAVQVTTVQGSHD VTLKTRTLSLDERQDLAALLEKDFNVDASTIETQSISSTISGEMRTNAVKAVIISCIFMLLYIWFRFKDIRFASSAILAL VHDVLVVVTAYALIRISVGSTFIACILTIVGYSVNDTIVIFDRIRENLHGIKKYSADELADIANESLTQTLSRSINTSLT TFVMVLLLFIFGHTSIREFSLPLMVGVLCGTYSSICIATELWYVMKLYLGKSAIKKQAAAPAKVSKKAKN
Sequences:
>Translated_790_residues MDGSKMTGRYKKMKKGKSWVIILVAVICIGLLGWYSTAVITDTKQKQEATANGESTKDKDYQNIKLGLDLSGGVSITYHI KDKNPSDKDVNDTIAKLEERAESYTTEYSVYKSGDDRITVEIPGVDDPNKVLEDLGSPGSLYFIAQYDSDGNANYTQDTS AQGGYKLNYDIDTLKANGSVILDGNDVKDASAQYDQSSSTSTKEPVVSLKLKDKAIDTWADATKKAKDAGQSIGIYYDDH FISVPTVSAVISDGNCVINGMKDYDEATSLATFIRVGAINLQLEELESNVVGAQLGGTALTNAVKAAIIGIILIMIFMIV LYGILGVVASIGLALYSMLTVLFIYWFEITLTLPGIAGIILGIGMAVDANVIVFARIREEIAGGKSVLAAVNEGYKKALS AILDGQVTTFIAALVLMVLGSGTVKGFAYTLMISIILSLFTALFIAKYLTRAFYGVGVRAEKFYGKAKKRKVIRFVQNRV KYFVISGVVILAGIGGMIYFGATSGNALNYSLEFVGGTSTTADFGKDYTAAEVEKDIVPSVSKLLGNSAVQVTTVQGSHD VTLKTRTLSLDERQDLAALLEKDFNVDASTIETQSISSTISGEMRTNAVKAVIISCIFMLLYIWFRFKDIRFASSAILAL VHDVLVVVTAYALIRISVGSTFIACILTIVGYSVNDTIVIFDRIRENLHGIKKYSADELADIANESLTQTLSRSINTSLT TFVMVLLLFIFGHTSIREFSLPLMVGVLCGTYSSICIATELWYVMKLYLGKSAIKKQAAAPAKVSKKAKN >Mature_790_residues MDGSKMTGRYKKMKKGKSWVIILVAVICIGLLGWYSTAVITDTKQKQEATANGESTKDKDYQNIKLGLDLSGGVSITYHI KDKNPSDKDVNDTIAKLEERAESYTTEYSVYKSGDDRITVEIPGVDDPNKVLEDLGSPGSLYFIAQYDSDGNANYTQDTS AQGGYKLNYDIDTLKANGSVILDGNDVKDASAQYDQSSSTSTKEPVVSLKLKDKAIDTWADATKKAKDAGQSIGIYYDDH FISVPTVSAVISDGNCVINGMKDYDEATSLATFIRVGAINLQLEELESNVVGAQLGGTALTNAVKAAIIGIILIMIFMIV LYGILGVVASIGLALYSMLTVLFIYWFEITLTLPGIAGIILGIGMAVDANVIVFARIREEIAGGKSVLAAVNEGYKKALS AILDGQVTTFIAALVLMVLGSGTVKGFAYTLMISIILSLFTALFIAKYLTRAFYGVGVRAEKFYGKAKKRKVIRFVQNRV KYFVISGVVILAGIGGMIYFGATSGNALNYSLEFVGGTSTTADFGKDYTAAEVEKDIVPSVSKLLGNSAVQVTTVQGSHD VTLKTRTLSLDERQDLAALLEKDFNVDASTIETQSISSTISGEMRTNAVKAVIISCIFMLLYIWFRFKDIRFASSAILAL VHDVLVVVTAYALIRISVGSTFIACILTIVGYSVNDTIVIFDRIRENLHGIKKYSADELADIANESLTQTLSRSINTSLT TFVMVLLLFIFGHTSIREFSLPLMVGVLCGTYSSICIATELWYVMKLYLGKSAIKKQAAAPAKVSKKAKN
Specific function: Required for efficient translocation of secretory pre- proteins under conditions of hypersecretion but is not required for the release of mature proteins from the membrane [H]
COG id: COG0342
COG function: function code U; Preprotein translocase subunit SecD
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the secD/secF family. SecF subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786609, Length=382, Percent_Identity=29.0575916230367, Blast_Score=163, Evalue=5e-41, Organism=Escherichia coli, GI1786610, Length=326, Percent_Identity=28.8343558282209, Blast_Score=134, Evalue=3e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005791 - InterPro: IPR022813 - InterPro: IPR022646 - InterPro: IPR022645 - InterPro: IPR005665 [H]
Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]
EC number: NA
Molecular weight: Translated: 85475; Mature: 85475
Theoretical pI: Translated: 7.44; Mature: 7.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDGSKMTGRYKKMKKGKSWVIILVAVICIGLLGWYSTAVITDTKQKQEATANGESTKDKD CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHCCCCCCCCCCC YQNIKLGLDLSGGVSITYHIKDKNPSDKDVNDTIAKLEERAESYTTEYSVYKSGDDRITV CCEEEEEEEECCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCEEEE EIPGVDDPNKVLEDLGSPGSLYFIAQYDSDGNANYTQDTSAQGGYKLNYDIDTLKANGSV EECCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECEEEEEECCCEE ILDGNDVKDASAQYDQSSSTSTKEPVVSLKLKDKAIDTWADATKKAKDAGQSIGIYYDDH EECCCCCCCCHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCC FISVPTVSAVISDGNCVINGMKDYDEATSLATFIRVGAINLQLEELESNVVGAQLGGTAL EEECCHHEEEEECCCEEEECCHHHHHHHHHHHHHHHHHEEEEHHHHHCCCCCHHCCCHHH TNAVKAAIIGIILIMIFMIVLYGILGVVASIGLALYSMLTVLFIYWFEITLTLPGIAGII HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LGIGMAVDANVIVFARIREEIAGGKSVLAAVNEGYKKALSAILDGQVTTFIAALVLMVLG HHHCCEECCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC SGTVKGFAYTLMISIILSLFTALFIAKYLTRAFYGVGVRAEKFYGKAKKRKVIRFVQNRV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHH KYFVISGVVILAGIGGMIYFGATSGNALNYSLEFVGGTSTTADFGKDYTAAEVEKDIVPS HHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEECCCCCCHHCCCCCCHHHHHHHHHHH VSKLLGNSAVQVTTVQGSHDVTLKTRTLSLDERQDLAALLEKDFNVDASTIETQSISSTI HHHHHCCCCEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH SGEMRTNAVKAVIISCIFMLLYIWFRFKDIRFASSAILALVHDVLVVVTAYALIRISVGS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH TFIACILTIVGYSVNDTIVIFDRIRENLHGIKKYSADELADIANESLTQTLSRSINTSLT HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH TFVMVLLLFIFGHTSIREFSLPLMVGVLCGTYSSICIATELWYVMKLYLGKSAIKKQAAA HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCHHHHHHHHCC PAKVSKKAKN CHHHHHCCCC >Mature Secondary Structure MDGSKMTGRYKKMKKGKSWVIILVAVICIGLLGWYSTAVITDTKQKQEATANGESTKDKD CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHCCCCCCCCCCC YQNIKLGLDLSGGVSITYHIKDKNPSDKDVNDTIAKLEERAESYTTEYSVYKSGDDRITV CCEEEEEEEECCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCEEEE EIPGVDDPNKVLEDLGSPGSLYFIAQYDSDGNANYTQDTSAQGGYKLNYDIDTLKANGSV EECCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECEEEEEECCCEE ILDGNDVKDASAQYDQSSSTSTKEPVVSLKLKDKAIDTWADATKKAKDAGQSIGIYYDDH EECCCCCCCCHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCC FISVPTVSAVISDGNCVINGMKDYDEATSLATFIRVGAINLQLEELESNVVGAQLGGTAL EEECCHHEEEEECCCEEEECCHHHHHHHHHHHHHHHHHEEEEHHHHHCCCCCHHCCCHHH TNAVKAAIIGIILIMIFMIVLYGILGVVASIGLALYSMLTVLFIYWFEITLTLPGIAGII HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LGIGMAVDANVIVFARIREEIAGGKSVLAAVNEGYKKALSAILDGQVTTFIAALVLMVLG HHHCCEECCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC SGTVKGFAYTLMISIILSLFTALFIAKYLTRAFYGVGVRAEKFYGKAKKRKVIRFVQNRV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHH KYFVISGVVILAGIGGMIYFGATSGNALNYSLEFVGGTSTTADFGKDYTAAEVEKDIVPS HHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEECCCCCCHHCCCCCCHHHHHHHHHHH VSKLLGNSAVQVTTVQGSHDVTLKTRTLSLDERQDLAALLEKDFNVDASTIETQSISSTI HHHHHCCCCEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH SGEMRTNAVKAVIISCIFMLLYIWFRFKDIRFASSAILALVHDVLVVVTAYALIRISVGS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH TFIACILTIVGYSVNDTIVIFDRIRENLHGIKKYSADELADIANESLTQTLSRSINTSLT HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH TFVMVLLLFIFGHTSIREFSLPLMVGVLCGTYSSICIATELWYVMKLYLGKSAIKKQAAA HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCHHHHHHHHCC PAKVSKKAKN CHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9694879; 9384377 [H]