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The map label for this gene is ymdB [C]

Identifier: 238922400

GI number: 238922400

Start: 599729

End: 600241

Strand: Reverse

Name: ymdB [C]

Synonym: EUBELI_20636

Alternate gene names: 238922400

Gene position: 600241-599729 (Counterclockwise)

Preceding gene: 238922401

Following gene: 238922399

Centisome position: 95.77

GC content: 36.45

Gene sequence:

>513_bases
ATGATTAAAACTGTTCTAGGTGATATAACAAAAATAGATTATGTTGATGCTATAGTAAATGCAGCAAATAACAGTCTCTT
AGGTGGTGGCGGTGTTGATGGAGCAATTCACAGGGTAGCAGGTCCTGATCTTTTAAAAGAATGTAGGACGCTTCATGGAT
GTGAAACAGGAGAAGCAAAGATTACCAAAGGCTATAATCTGCCATGTGATTATGTTATACATACAGTCGGACCTATATGG
AGAGGCGGAAAGGATAATGAGGAGCAGTTGCTTGCCAGCTGTTATTATCATTCGCTTAAACTTGCAATGGAAAAAGGTAT
AAAAAGAATAGCGTTTCCATCTATATCAACAGGTGTTTATGGTTTTCCTGTTAAACTGGCAGCACACATTGCTGTAAATG
TTGTGGCAAGATTTGAGCAGGAATTTCCAAAGCAAATAGAAGAAATATATTTTGTTCTGTTTGACAGAGATACAGAATCA
GCATATGAAAAAGAAGTTGATAAGCTATATTAA

Upstream 100 bases:

>100_bases
AAGGATGGAAGAAAAAGAGTAATTGAAGGCGATATTGGCGGTGGTACAATTGACGGTATAATGGGAAATTATTTAAAGAA
AATATTTGGGAGAAATTACG

Downstream 100 bases:

>100_bases
ATGGAGTAACAGATGATAGAAAAAGTAGTATTCATGAACATGTGCATGATTAGTGATAATAAAGGAAATGTACTGGCCTT
GGATAAAGTGGGCAAGAATT

Product: RNA-directed RNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MIKTVLGDITKIDYVDAIVNAANNSLLGGGGVDGAIHRVAGPDLLKECRTLHGCETGEAKITKGYNLPCDYVIHTVGPIW
RGGKDNEEQLLASCYYHSLKLAMEKGIKRIAFPSISTGVYGFPVKLAAHIAVNVVARFEQEFPKQIEEIYFVLFDRDTES
AYEKEVDKLY

Sequences:

>Translated_170_residues
MIKTVLGDITKIDYVDAIVNAANNSLLGGGGVDGAIHRVAGPDLLKECRTLHGCETGEAKITKGYNLPCDYVIHTVGPIW
RGGKDNEEQLLASCYYHSLKLAMEKGIKRIAFPSISTGVYGFPVKLAAHIAVNVVARFEQEFPKQIEEIYFVLFDRDTES
AYEKEVDKLY
>Mature_170_residues
MIKTVLGDITKIDYVDAIVNAANNSLLGGGGVDGAIHRVAGPDLLKECRTLHGCETGEAKITKGYNLPCDYVIHTVGPIW
RGGKDNEEQLLASCYYHSLKLAMEKGIKRIAFPSISTGVYGFPVKLAAHIAVNVVARFEQEFPKQIEEIYFVLFDRDTES
AYEKEVDKLY

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=151, Percent_Identity=58.9403973509934, Blast_Score=168, Evalue=2e-42,
Organism=Homo sapiens, GI13569840, Length=166, Percent_Identity=48.7951807228916, Blast_Score=157, Evalue=4e-39,
Organism=Homo sapiens, GI207450721, Length=159, Percent_Identity=38.9937106918239, Blast_Score=112, Evalue=1e-25,
Organism=Homo sapiens, GI8923143, Length=159, Percent_Identity=38.9937106918239, Blast_Score=112, Evalue=2e-25,
Organism=Homo sapiens, GI20336746, Length=173, Percent_Identity=34.6820809248555, Blast_Score=96, Evalue=1e-20,
Organism=Homo sapiens, GI93141018, Length=160, Percent_Identity=33.125, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI93141020, Length=160, Percent_Identity=33.125, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI4758496, Length=160, Percent_Identity=33.125, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI154813199, Length=172, Percent_Identity=34.3023255813954, Blast_Score=81, Evalue=5e-16,
Organism=Homo sapiens, GI165377137, Length=165, Percent_Identity=30.3030303030303, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI226371718, Length=171, Percent_Identity=28.6549707602339, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371716, Length=169, Percent_Identity=30.1775147928994, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI226371714, Length=169, Percent_Identity=30.1775147928994, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI226371712, Length=169, Percent_Identity=30.1775147928994, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI226371710, Length=169, Percent_Identity=30.1775147928994, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI226371706, Length=169, Percent_Identity=30.1775147928994, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI8923920, Length=140, Percent_Identity=30.7142857142857, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1787283, Length=169, Percent_Identity=52.6627218934911, Blast_Score=164, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI17538214, Length=157, Percent_Identity=49.6815286624204, Blast_Score=125, Evalue=9e-30,
Organism=Drosophila melanogaster, GI24586353, Length=134, Percent_Identity=39.5522388059701, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18797; Mature: 18797

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKTVLGDITKIDYVDAIVNAANNSLLGGGGVDGAIHRVAGPDLLKECRTLHGCETGEAK
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCE
ITKGYNLPCDYVIHTVGPIWRGGKDNEEQLLASCYYHSLKLAMEKGIKRIAFPSISTGVY
ECCCCCCCHHHHHHHHCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GFPVKLAAHIAVNVVARFEQEFPKQIEEIYFVLFDRDTESAYEKEVDKLY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCC
>Mature Secondary Structure
MIKTVLGDITKIDYVDAIVNAANNSLLGGGGVDGAIHRVAGPDLLKECRTLHGCETGEAK
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCE
ITKGYNLPCDYVIHTVGPIWRGGKDNEEQLLASCYYHSLKLAMEKGIKRIAFPSISTGVY
ECCCCCCCHHHHHHHHCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GFPVKLAAHIAVNVVARFEQEFPKQIEEIYFVLFDRDTESAYEKEVDKLY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824 [H]