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The map label for this gene is yhdI [H]

Identifier: 238922334

GI number: 238922334

Start: 538850

End: 540202

Strand: Reverse

Name: yhdI [H]

Synonym: EUBELI_20570

Alternate gene names: 238922334

Gene position: 540202-538850 (Counterclockwise)

Preceding gene: 238922337

Following gene: 238922332

Centisome position: 86.19

GC content: 41.32

Gene sequence:

>1353_bases
ATGTACGAATATCTGTATGAACTGATTAAGGAAGATATAGCTGACGGGAAGCTTAAGGCTGATGAGAAGCTGCCATCAAA
GCGAGGGCTTTCACAGCATTTGCAGATAAGTGTCAAGACGGTGGAGAACGCATATGAGCAGCTTCTTCTGGAAGGTTATA
TCCGATCTGAGGAAAAAAGAGGGTATTATGTTAATAAGATTGCCGTGGTTACAGGTGGTGCACCAGGGTATGCTGCTCCT
GTGAAAAGATTCCAGGAGGAGACTTATCTTGCTGATTTGACGGCAAATAATATCAGGTATGATAGATTTCCATTTGCTAC
ATGGGCAAAGGTTATGAGGGAAACCCTGACCGATTATAATACTTCACTTCTTAAGACTGTACCTTTTAACGGTGTGTTGC
AGCTTCGTGAAGCGATTGCAGACCATCTTAACAGATACCGTGGAATGCAGGTTTCAGCAGACCATATTATTATAGGGGCC
GGAACGGAATATCTGTATAACAGGCTGTTACAGCTCTTAGGTCCAGATGTGAAGTTTGGTGTTGAGAATCCCGGATACCG
TAAGATTACCAAGATATATGATGAAAATGGTGTGGAGTGGGATTATGTTAATATTGATGATAAGGGTATGAAAGTCGATG
AACTTAGAATGAAAGATATAAATGTAGCACATGTAAGTCCTGAACATCATTTTCCAATTGGCCTTGTTATGCCGGTTGCA
AGAAGACAGGAACTGCTTAACTGGGCGGCGGCGGAGCCAGGCAGATATATAATAGAGGATGATTTTGACTGTGAATTCCG
TATGCAGGGCAAACCTATTCCGTCCATTCAGTCGAGAGACAGAAGTCACAGAGTAATATATATGAACACATTTTCGAAGA
CAATGGTTCCTTCACTTAGAATAGGATATATGGTACTGCCAGAAAAGCTTATGGAAAAATATATTTCAACAATGAATTTT
TACTCGTGTACTGTGTCGGGATTTGAGCAGTATGCAATGGCGGCATTTATTGAGAAGGGATACTTTGAGCGCCACATTAA
GAGGCTTGTCAATGATTACAGGGGACGCCGTGAAAAGATATGCAGGATGTTTCGCGAATCAAGGCTTAGTGAGATAAGTA
CGATATATCAGGATGATGCGGGAACACATTTTCTGCTGCATGTGAAGACTTCCTTAAGTGATGTTGAGATTAAATGGGCA
GTCAGGCAGAAGGGGATTCTGATTAACTGCCTTTCAGAGTATTGTTTCGCTGATGCGGATAAGTACCATGGAATACTTGT
AATTCATTATTCGGATATGGACGAAGCAACTCTTAAGCTTGTAATTGCTGCTTTTGAGGAAATATTCCTGTAA

Upstream 100 bases:

>100_bases
ATTATAATTAAAACTGATATCTTTTAAATATCCAAAATGCATATATAATAGGAGACCAGATTTGCTTACATATGATTTAG
ATAAACGCAGAAACAAAACA

Downstream 100 bases:

>100_bases
AAAATGTGATGCAAAGCATGAATAGCATAATTAAATATATGAAAAAAGGAATCCCATAAGCAGAGAGGCAACATCTCCCT
GCTCACAGGATTCCTTTTAT

Product: GntR family transcriptional regulator / MocR family aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MYEYLYELIKEDIADGKLKADEKLPSKRGLSQHLQISVKTVENAYEQLLLEGYIRSEEKRGYYVNKIAVVTGGAPGYAAP
VKRFQEETYLADLTANNIRYDRFPFATWAKVMRETLTDYNTSLLKTVPFNGVLQLREAIADHLNRYRGMQVSADHIIIGA
GTEYLYNRLLQLLGPDVKFGVENPGYRKITKIYDENGVEWDYVNIDDKGMKVDELRMKDINVAHVSPEHHFPIGLVMPVA
RRQELLNWAAAEPGRYIIEDDFDCEFRMQGKPIPSIQSRDRSHRVIYMNTFSKTMVPSLRIGYMVLPEKLMEKYISTMNF
YSCTVSGFEQYAMAAFIEKGYFERHIKRLVNDYRGRREKICRMFRESRLSEISTIYQDDAGTHFLLHVKTSLSDVEIKWA
VRQKGILINCLSEYCFADADKYHGILVIHYSDMDEATLKLVIAAFEEIFL

Sequences:

>Translated_450_residues
MYEYLYELIKEDIADGKLKADEKLPSKRGLSQHLQISVKTVENAYEQLLLEGYIRSEEKRGYYVNKIAVVTGGAPGYAAP
VKRFQEETYLADLTANNIRYDRFPFATWAKVMRETLTDYNTSLLKTVPFNGVLQLREAIADHLNRYRGMQVSADHIIIGA
GTEYLYNRLLQLLGPDVKFGVENPGYRKITKIYDENGVEWDYVNIDDKGMKVDELRMKDINVAHVSPEHHFPIGLVMPVA
RRQELLNWAAAEPGRYIIEDDFDCEFRMQGKPIPSIQSRDRSHRVIYMNTFSKTMVPSLRIGYMVLPEKLMEKYISTMNF
YSCTVSGFEQYAMAAFIEKGYFERHIKRLVNDYRGRREKICRMFRESRLSEISTIYQDDAGTHFLLHVKTSLSDVEIKWA
VRQKGILINCLSEYCFADADKYHGILVIHYSDMDEATLKLVIAAFEEIFL
>Mature_450_residues
MYEYLYELIKEDIADGKLKADEKLPSKRGLSQHLQISVKTVENAYEQLLLEGYIRSEEKRGYYVNKIAVVTGGAPGYAAP
VKRFQEETYLADLTANNIRYDRFPFATWAKVMRETLTDYNTSLLKTVPFNGVLQLREAIADHLNRYRGMQVSADHIIIGA
GTEYLYNRLLQLLGPDVKFGVENPGYRKITKIYDENGVEWDYVNIDDKGMKVDELRMKDINVAHVSPEHHFPIGLVMPVA
RRQELLNWAAAEPGRYIIEDDFDCEFRMQGKPIPSIQSRDRSHRVIYMNTFSKTMVPSLRIGYMVLPEKLMEKYISTMNF
YSCTVSGFEQYAMAAFIEKGYFERHIKRLVNDYRGRREKICRMFRESRLSEISTIYQDDAGTHFLLHVKTSLSDVEIKWA
VRQKGILINCLSEYCFADADKYHGILVIHYSDMDEATLKLVIAAFEEIFL

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790797, Length=381, Percent_Identity=29.3963254593176, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787710, Length=428, Percent_Identity=25.4672897196262, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52196; Mature: 52196

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYEYLYELIKEDIADGKLKADEKLPSKRGLSQHLQISVKTVENAYEQLLLEGYIRSEEKR
CHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCHHHEEHHHHHHHHHHHHHHHHHHCCCCCC
GYYVNKIAVVTGGAPGYAAPVKRFQEETYLADLTANNIRYDRFPFATWAKVMRETLTDYN
CEEEEEEEEEECCCCCHHHHHHHHHHHHHEEECCCCCEEECCCCHHHHHHHHHHHHHHCC
TSLLKTVPFNGVLQLREAIADHLNRYRGMQVSADHIIIGAGTEYLYNRLLQLLGPDVKFG
CHHHEECCCHHHHHHHHHHHHHHHHHCCCEEECCEEEEECCHHHHHHHHHHHHCCCCEEC
VENPGYRKITKIYDENGVEWDYVNIDDKGMKVDELRMKDINVAHVSPEHHFPIGLVMPVA
CCCCCHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHH
RRQELLNWAAAEPGRYIIEDDFDCEFRMQGKPIPSIQSRDRSHRVIYMNTFSKTMVPSLR
HHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCHHCCCCCCEEEEEECCCHHHCCCHH
IGYMVLPEKLMEKYISTMNFYSCTVSGFEQYAMAAFIEKGYFERHIKRLVNDYRGRREKI
CCCEECCHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
CRMFRESRLSEISTIYQDDAGTHFLLHVKTSLSDVEIKWAVRQKGILINCLSEYCFADAD
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEHHCCCHHHHHHHHHHCCCC
KYHGILVIHYSDMDEATLKLVIAAFEEIFL
CCCCEEEEEECCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYEYLYELIKEDIADGKLKADEKLPSKRGLSQHLQISVKTVENAYEQLLLEGYIRSEEKR
CHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCHHHEEHHHHHHHHHHHHHHHHHHCCCCCC
GYYVNKIAVVTGGAPGYAAPVKRFQEETYLADLTANNIRYDRFPFATWAKVMRETLTDYN
CEEEEEEEEEECCCCCHHHHHHHHHHHHHEEECCCCCEEECCCCHHHHHHHHHHHHHHCC
TSLLKTVPFNGVLQLREAIADHLNRYRGMQVSADHIIIGAGTEYLYNRLLQLLGPDVKFG
CHHHEECCCHHHHHHHHHHHHHHHHHCCCEEECCEEEEECCHHHHHHHHHHHHCCCCEEC
VENPGYRKITKIYDENGVEWDYVNIDDKGMKVDELRMKDINVAHVSPEHHFPIGLVMPVA
CCCCCHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHH
RRQELLNWAAAEPGRYIIEDDFDCEFRMQGKPIPSIQSRDRSHRVIYMNTFSKTMVPSLR
HHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCHHCCCCCCEEEEEECCCHHHCCCHH
IGYMVLPEKLMEKYISTMNFYSCTVSGFEQYAMAAFIEKGYFERHIKRLVNDYRGRREKI
CCCEECCHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
CRMFRESRLSEISTIYQDDAGTHFLLHVKTSLSDVEIKWAVRQKGILINCLSEYCFADAD
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEHHCCCHHHHHHHHHHCCCC
KYHGILVIHYSDMDEATLKLVIAAFEEIFL
CCCCEEEEEECCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]