Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
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Accession | NC_012779 |
Length | 3,812,315 |
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The map label for this gene is 238921476
Identifier: 238921476
GI number: 238921476
Start: 3513680
End: 3514153
Strand: Reverse
Name: 238921476
Synonym: NT01EI_3628
Alternate gene names: NA
Gene position: 3514153-3513680 (Counterclockwise)
Preceding gene: 238921477
Following gene: 238921475
Centisome position: 92.18
GC content: 66.46
Gene sequence:
>474_bases ATGCTATGGCTGACGCTGGTGCTGGGAATACCTGCGTTCACTGCGCTGGGGATGAGTGCCGAGTGTCTGCTGCGTCAGCG TCGGGCGCCGTTGGTCAGGTTGGTCGCAGAGCAGACCCGCCAGCGGGAGACAGCTCAGCGCCAGCTTCAACAGAGGCTGG ATGCACTGTCCGCCTCTCTGCAGCGTGAGTCGGCATCCGGGCCTTCTGGGGCCGCGCTGCCGGGCGCGACGGTGGCGGGG CTGGCACAGCAGCTGCGTCAGGTGCAGGCCACGATCCCTGATGCGGTGTGGCTGACGCGCCTGCTCCATCAACCGCCGTA TTGGCTCTTGGAGGGGCAGGGTGAATCCCGGCAGGAGGTGGCCGATTTTGCCCTGCATATGGCGGCGTGGCGGTGGTTGG GGCTGCGTCGTGCTGACGATGGTCGCTGGCAGTTTACGCTGCGCCTCTGTGCGATGGAGGGGTGCCATGAGTGA
Upstream 100 bases:
>100_bases TTTGCCTCGCGCTGGGGCTGGCCGTGATGCCGGAGTCACCGCTGTGGATGACATAGATCTGCTTTCTTGGCGTGAGGCCC GGCGCCGGGCGCGTCTTCGT
Downstream 100 bases:
>100_bases ACTGCTGCTGTCGTTGCAGGGTAGACTGTATACCTTATCACCACGTGCGCTGCATCAATGGCTGTGGGGCGGTGTTTTTT TGCTTCTGATGTCGCTGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 157; Mature: 157
Protein sequence:
>157_residues MLWLTLVLGIPAFTALGMSAECLLRQRRAPLVRLVAEQTRQRETAQRQLQQRLDALSASLQRESASGPSGAALPGATVAG LAQQLRQVQATIPDAVWLTRLLHQPPYWLLEGQGESRQEVADFALHMAAWRWLGLRRADDGRWQFTLRLCAMEGCHE
Sequences:
>Translated_157_residues MLWLTLVLGIPAFTALGMSAECLLRQRRAPLVRLVAEQTRQRETAQRQLQQRLDALSASLQRESASGPSGAALPGATVAG LAQQLRQVQATIPDAVWLTRLLHQPPYWLLEGQGESRQEVADFALHMAAWRWLGLRRADDGRWQFTLRLCAMEGCHE >Mature_157_residues MLWLTLVLGIPAFTALGMSAECLLRQRRAPLVRLVAEQTRQRETAQRQLQQRLDALSASLQRESASGPSGAALPGATVAG LAQQLRQVQATIPDAVWLTRLLHQPPYWLLEGQGESRQEVADFALHMAAWRWLGLRRADDGRWQFTLRLCAMEGCHE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17581; Mature: 17581
Theoretical pI: Translated: 8.97; Mature: 8.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLWLTLVLGIPAFTALGMSAECLLRQRRAPLVRLVAEQTRQRETAQRQLQQRLDALSASL CHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRESASGPSGAALPGATVAGLAQQLRQVQATIPDAVWLTRLLHQPPYWLLEGQGESRQEV HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCCHHHH ADFALHMAAWRWLGLRRADDGRWQFTLRLCAMEGCHE HHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCC >Mature Secondary Structure MLWLTLVLGIPAFTALGMSAECLLRQRRAPLVRLVAEQTRQRETAQRQLQQRLDALSASL CHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRESASGPSGAALPGATVAGLAQQLRQVQATIPDAVWLTRLLHQPPYWLLEGQGESRQEV HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCCHHHH ADFALHMAAWRWLGLRRADDGRWQFTLRLCAMEGCHE HHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA