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The map label for this gene is ybiS [H]

Identifier: 238921306

GI number: 238921306

Start: 3340015

End: 3340467

Strand: Reverse

Name: ybiS [H]

Synonym: NT01EI_3450

Alternate gene names: 238921306

Gene position: 3340467-3340015 (Counterclockwise)

Preceding gene: 238921309

Following gene: 238921305

Centisome position: 87.62

GC content: 64.24

Gene sequence:

>453_bases
ATGCACGAAGAGTACGCCGCCAACGGCCAGTACCTGCCTGCCGTCTTCCCCGCCGGTCCGGACAATCCGATGGGGCTGTA
CGCCCTGTACGTCGGCCGCCTGTATGCGGTGCACGGCACCAACGCCAACTTCGGTATCGGTCTGCGCGTCAGCCACGGCT
GCGTGCGGCTGCGTGACCCAGACATCAAGTGGCTGTTTAAGAATGTCCCGATAGGTACCCGCGTACAGTTTATCGACGAA
CCGGTAAAAGCCACCGTCGAACCGGACGGCTCCCGCTATATCGAGGTGCATAACCCGCTCTCCACCACCGAGGCGGAGTG
GCAGTCCCGCGCGCCGGTCCCGATCCAGCTCAACGCCGCGGTGACCAAGATCATCGCCGACCCGAGCGTCAGCACCCACG
CGGTAGACGAAGCCCTGAAGGCCCGCTCCGGCATGCCGGTGGAGATCAACTGA

Upstream 100 bases:

>100_bases
CCGATCGGCATCGGCCAGCTGGGCCGCGACACCCCGATGAACTGGGTGACCTCCGTCCAGCGCAAGAAAGCCGGCCCGAC
CTGGACCCCGACCAAAAAAA

Downstream 100 bases:

>100_bases
GTGCCAATGGCTGGCGGAGTACCACAGGCGGGGCAGTGCCCCGCCTTTTTTGTCACTGCCCGGTTCCTGGACCAGGGCTG
TCTCGGCCTGGTGCCAAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MHEEYAANGQYLPAVFPAGPDNPMGLYALYVGRLYAVHGTNANFGIGLRVSHGCVRLRDPDIKWLFKNVPIGTRVQFIDE
PVKATVEPDGSRYIEVHNPLSTTEAEWQSRAPVPIQLNAAVTKIIADPSVSTHAVDEALKARSGMPVEIN

Sequences:

>Translated_150_residues
MHEEYAANGQYLPAVFPAGPDNPMGLYALYVGRLYAVHGTNANFGIGLRVSHGCVRLRDPDIKWLFKNVPIGTRVQFIDE
PVKATVEPDGSRYIEVHNPLSTTEAEWQSRAPVPIQLNAAVTKIIADPSVSTHAVDEALKARSGMPVEIN
>Mature_150_residues
MHEEYAANGQYLPAVFPAGPDNPMGLYALYVGRLYAVHGTNANFGIGLRVSHGCVRLRDPDIKWLFKNVPIGTRVQFIDE
PVKATVEPDGSRYIEVHNPLSTTEAEWQSRAPVPIQLNAAVTKIIADPSVSTHAVDEALKARSGMPVEIN

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=150, Percent_Identity=72, Blast_Score=232, Evalue=9e-63,
Organism=Escherichia coli, GI1788299, Length=149, Percent_Identity=60.4026845637584, Blast_Score=194, Evalue=1e-51,
Organism=Escherichia coli, GI1787356, Length=152, Percent_Identity=46.0526315789474, Blast_Score=134, Evalue=3e-33,
Organism=Escherichia coli, GI1787968, Length=145, Percent_Identity=47.5862068965517, Blast_Score=126, Evalue=6e-31,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 16406; Mature: 16406

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEEYAANGQYLPAVFPAGPDNPMGLYALYVGRLYAVHGTNANFGIGLRVSHGCVRLRDP
CCCCCCCCCCCCEEEECCCCCCCCHHHEEEEEEEEEEECCCCCCEEEEEECCCEEEEECC
DIKWLFKNVPIGTRVQFIDEPVKATVEPDGSRYIEVHNPLSTTEAEWQSRAPVPIQLNAA
CCEEEEECCCCCCEEEEECCCCEEEECCCCCEEEEECCCCCCCCHHHHCCCCCEEEECHH
VTKIIADPSVSTHAVDEALKARSGMPVEIN
EEEEECCCCCCHHHHHHHHHHCCCCCEEEC
>Mature Secondary Structure
MHEEYAANGQYLPAVFPAGPDNPMGLYALYVGRLYAVHGTNANFGIGLRVSHGCVRLRDP
CCCCCCCCCCCCEEEECCCCCCCCHHHEEEEEEEEEEECCCCCCEEEEEECCCEEEEECC
DIKWLFKNVPIGTRVQFIDEPVKATVEPDGSRYIEVHNPLSTTEAEWQSRAPVPIQLNAA
CCEEEEECCCCCCEEEEECCCCEEEECCCCCEEEEECCCCCCCCHHHHCCCCCEEEECHH
VTKIIADPSVSTHAVDEALKARSGMPVEIN
EEEEECCCCCCHHHHHHHHHHCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]