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The map label for this gene is udp [H]

Identifier: 238921251

GI number: 238921251

Start: 3280162

End: 3280908

Strand: Direct

Name: udp [H]

Synonym: NT01EI_3394

Alternate gene names: 238921251

Gene position: 3280162-3280908 (Clockwise)

Preceding gene: 238921250

Following gene: 238921252

Centisome position: 86.04

GC content: 66.67

Gene sequence:

>747_bases
ATGGAACGACAACCACACATTCGCCTGAGCCGTGCCATGACCCAGGCACGCTATGCGCTGCTGCCCGGCGATCCGCAGCG
CGTAGAGCACGTCGCCCGCTTTCTGGAGAAGGTCGAACCGCTGGGGCAGAACCGTGAATTCCGTGCGCTGCGCGGCTGGT
TCCACGGCATCGAACTCCTGGCCGTATCAACCGGCATCGGCGGCGCATCGACCGCCATCGCCGTGGAGGAGCTGCACCGC
ATCGGCATCACCACCCTGATCCGTATCGGCAGCTGCGGCGCCCTGCAGGATCACATGGCGATGGGCGATCTGGTGATCGC
CAGCGGCGCGGTGCGCGATGAGGGAACCAGCCACGCCTATGCACCCGCCGGTTACCCCGCCTGCGCCGACAACGGCCTGG
TGCACCTGCTGCGCACAGAGGCCGGGCGCCTGGCGTTCCCGGCGCACTGTGGCTATGTGCGCAGCCACGACAGCTTTTAT
ACCGACCGGGAGGCCGAGCTGGACGCCGAATGGTCGGCGCGCGGTATTCTGGCCGCCGATATGGAAACCGCGCCGCTGAT
GGTGGTCGGTGCGCTGCGCGGCCTGCGCACCGCCTCGGTACTCAACGTGGTGGTCACCCACAACGGTGGGCTGGCGCAGG
GCATCAACGACTACCAGCAGCAGGAAGCGCACAGCCAGCGTGGCGAAGCCAGGGAGATCGAGCTGGCCCTCAACGCCATC
CGACAGGATCATAACAAAGGGAACTGA

Upstream 100 bases:

>100_bases
GCAACATATCATCGCGGTCGACGGGGAATACATCACCCTGCTCGACGCAGAGCGTCTGCGGGGGGAGGCCGGCCTGTAAC
ACAGGATCACGAGGAGTCTG

Downstream 100 bases:

>100_bases
ACATGGATTTTTTCAGCATTAACAACGTAATGGCAAACATTCCCCTCGGCGAAGGCGGATATGCCCTGTCATGGATCGAA
GCCATCGGCACGCTGTTTGG

Product: phosphorylasefamily protein

Products: NA

Alternate protein names: UPase; UrdPase [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MERQPHIRLSRAMTQARYALLPGDPQRVEHVARFLEKVEPLGQNREFRALRGWFHGIELLAVSTGIGGASTAIAVEELHR
IGITTLIRIGSCGALQDHMAMGDLVIASGAVRDEGTSHAYAPAGYPACADNGLVHLLRTEAGRLAFPAHCGYVRSHDSFY
TDREAELDAEWSARGILAADMETAPLMVVGALRGLRTASVLNVVVTHNGGLAQGINDYQQQEAHSQRGEAREIELALNAI
RQDHNKGN

Sequences:

>Translated_248_residues
MERQPHIRLSRAMTQARYALLPGDPQRVEHVARFLEKVEPLGQNREFRALRGWFHGIELLAVSTGIGGASTAIAVEELHR
IGITTLIRIGSCGALQDHMAMGDLVIASGAVRDEGTSHAYAPAGYPACADNGLVHLLRTEAGRLAFPAHCGYVRSHDSFY
TDREAELDAEWSARGILAADMETAPLMVVGALRGLRTASVLNVVVTHNGGLAQGINDYQQQEAHSQRGEAREIELALNAI
RQDHNKGN
>Mature_248_residues
MERQPHIRLSRAMTQARYALLPGDPQRVEHVARFLEKVEPLGQNREFRALRGWFHGIELLAVSTGIGGASTAIAVEELHR
IGITTLIRIGSCGALQDHMAMGDLVIASGAVRDEGTSHAYAPAGYPACADNGLVHLLRTEAGRLAFPAHCGYVRSHDSFY
TDREAELDAEWSARGILAADMETAPLMVVGALRGLRTASVLNVVVTHNGGLAQGINDYQQQEAHSQRGEAREIELALNAI
RQDHNKGN

Specific function: Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synth

COG id: COG2820

COG function: function code F; Uridine phosphorylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PNP/UDP phosphorylase family [H]

Homologues:

Organism=Escherichia coli, GI1790265, Length=237, Percent_Identity=35.4430379746835, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1790844, Length=202, Percent_Identity=30.1980198019802, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018017
- InterPro:   IPR018016
- InterPro:   IPR000845
- InterPro:   IPR010058 [H]

Pfam domain/function: PF01048 PNP_UDP_1 [H]

EC number: =2.4.2.3 [H]

Molecular weight: Translated: 26930; Mature: 26930

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS01232 PNP_UDP_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERQPHIRLSRAMTQARYALLPGDPQRVEHVARFLEKVEPLGQNREFRALRGWFHGIELL
CCCCCCHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHEEE
AVSTGIGGASTAIAVEELHRIGITTLIRIGSCGALQDHMAMGDLVIASGAVRDEGTSHAY
EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEECCCCCCCCCCCCC
APAGYPACADNGLVHLLRTEAGRLAFPAHCGYVRSHDSFYTDREAELDAEWSARGILAAD
CCCCCCCCCCCCEEEEEECCCCCEECCHHCCEEECCCCCCCCCCCCCCCCCCCCCEEEEC
METAPLMVVGALRGLRTASVLNVVVTHNGGLAQGINDYQQQEAHSQRGEAREIELALNAI
CCCCHHHHHHHHHHHHHHHHEEEEEECCCCHHHCHHHHHHHHHHHHCCCHHHHHHHHHHH
RQDHNKGN
HHHCCCCC
>Mature Secondary Structure
MERQPHIRLSRAMTQARYALLPGDPQRVEHVARFLEKVEPLGQNREFRALRGWFHGIELL
CCCCCCHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHEEE
AVSTGIGGASTAIAVEELHRIGITTLIRIGSCGALQDHMAMGDLVIASGAVRDEGTSHAY
EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEECCCCCCCCCCCCC
APAGYPACADNGLVHLLRTEAGRLAFPAHCGYVRSHDSFYTDREAELDAEWSARGILAAD
CCCCCCCCCCCCEEEEEECCCCCEECCHHCCEEECCCCCCCCCCCCCCCCCCCCCEEEEC
METAPLMVVGALRGLRTASVLNVVVTHNGGLAQGINDYQQQEAHSQRGEAREIELALNAI
CCCCHHHHHHHHHHHHHHHHEEEEEECCCCHHHCHHHHHHHHHHHHCCCHHHHHHHHHHH
RQDHNKGN
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2674901; 1379743; 9278503; 8506346; 8899705; 9661793; 7796917; 12499542 [H]