Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
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Accession | NC_012779 |
Length | 3,812,315 |
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The map label for this gene is 238921179
Identifier: 238921179
GI number: 238921179
Start: 3202114
End: 3203205
Strand: Reverse
Name: 238921179
Synonym: NT01EI_3320
Alternate gene names: NA
Gene position: 3203205-3202114 (Counterclockwise)
Preceding gene: 238921180
Following gene: 238921178
Centisome position: 84.02
GC content: 64.93
Gene sequence:
>1092_bases GTGGCGAATGTCGGCAATAATCTGACCCTACGCAGTGAACAGGGGGTTGATAGCTATGAGGCCAAGCAATCCAGCTTCAG CGCCGGGGGGAGCATCGGCTTCGGCAATGGCTCTCTGGGTATCGCCGCCAGCCGCGATAAGATGCACAGCGACTATGCCT CGGTGGAGAGCCAGAGCGGCATCTTTGCCGGTACCGGTGGCTTTGATATCACCGTGGGTAATCATACCCAGCTGGACGGC GCGGCCATTGCCAGCGCGGCCGGTCAGGAGAACAACCGCTTAGATAGCGGAACCCTGGGCTTTGCCGATATCGACAACCG CGCTGAGTTCAGGGCACAGCACCAGGGGTTTGGCCTTAGCTCCGGCGGCAGCATTGGCGGCCAGTTCGCGGGCAATATGG CCAATAGCCTGTTGGCGGGCGCCAATCATCAGGAGCGCGCCCGCGGCACCACCCAGTCGGCTATCGCCGACGGCGCGATC GTCGTGCGCGATCGGGCCAACCAGCAGCAGGATGTCGCCGGGTTAGCGCGCGACACGGAGCAGGCGCACCAGCCTCTCTC CCCTATCTTCGACAAGGAGAAAGCGCAGCGGCGCCTGCAGCAGGCCCGGCTGATCGGTGAGATTGGCAATCAGGTGGCCG ATATTGCGCGGACAGAGGGCGAGATCGCCGGGGAAAAAGCCCGGCGTGACCCGACGGCCCTGAATCAGGCGCGTACCGCA CTGGAAGCCAGCGGTAAACCGTTTACCGAGAAGGATGTAGCGCAGCGGGCGTATAACACCGGCATGCGCGATTCCGGGTT TGGCACCGGAGGGCAATACCAGCAGGCGATTCAGGCGGCCACGGCGGCGGTACAGGGGCTGGCGGGCGGCAACCTGCAGG CGGCGCTGGCGGGCGGCGCGGCGCCGTATATTAGTGAGATAATCAAGCAGAGCACCCCGGACGGCGCGGGGCGTGTGGCG GCCCATGCGGTGGTAAACGCGGCGCTTGCCGCAGCACAGGGGAATCATCCCCTTGCCGGAGCCGCAGGTGCGGCCTCCGG CGAAATCGTCGGCCATGCTGGCCACGGAGATATACCAGAAACCGGTCGCTGA
Upstream 100 bases:
>100_bases TAGGTATAGGCCTTTGGCTAAAAGATAAACTATATGAATATAAGAGTAAGAAAGAGAAGACACCACCCTGAAGGGGGCGC AGGTACAGGGGGAGAACGTG
Downstream 100 bases:
>100_bases GCTCAGCGAAAGCGAGAAACAGACCGTTTCAACACTGGCCACCGTTGCCGCCGGACTGGCCGGCGGTCTGGTGGGCGACG CGGGGGCCTCTGCGCTCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: Filamentous Hemagglutinin; Filamentous Haemagglutinin Outer Membrane Protein; Hemagglutinin-Related Protein; Adhesin/Hemagglutinin; Adhesin/Hemolysin; Adhesin; Hemolysin; Hemagglutinin/Hemolysin-Related Protein; Filamentous Haemagglutinin; Large Exoprotein Involved In Heme Utilization Or Adhesion; ShlA/HecA/FhaA Exofamily Protein; Cell Surface Protein; Adhesin HecA Family; Adhesin/Hemagglutinin/Hemolysin; Hemolysin/Hemagglutinin-Like Protein; Contact-Dependent Inhibitor A; FhaB Protein; Adhesin/Haemagluttinin; Filamentous Hemagglutinin/Adhesin; Filamentous Haemagglutinin Family Protein; Contact-Dependent Inhibition Of Growth Factor CdiA; Exoprotein Adhesin Or Hemolysin; Filamentous Haemagglutinin Adhesin HecA; Member Of ShlA/HecA/FhaA Exoprotein Family; Haemolysin-Like Protein; Hemolysin/Hemagglutinin-Like Protein HecA; Haemolysin/Haemagglutinin; AT-2 Family Transporter; Cell Surface Haemagluttinin Protein; Adhesin/Hemolysin Adhesin HecA; Filamentous Hemagglutinin / Adhesin; Hemagglutinin/Adhesin Repeat-Containing Protein; Hemagglutinin/Hemolysin Family Protein; Hemagglutinin/Hemolysin- Related Exoprotein; Fimbrial Adhesin
Number of amino acids: Translated: 363; Mature: 362
Protein sequence:
>363_residues MANVGNNLTLRSEQGVDSYEAKQSSFSAGGSIGFGNGSLGIAASRDKMHSDYASVESQSGIFAGTGGFDITVGNHTQLDG AAIASAAGQENNRLDSGTLGFADIDNRAEFRAQHQGFGLSSGGSIGGQFAGNMANSLLAGANHQERARGTTQSAIADGAI VVRDRANQQQDVAGLARDTEQAHQPLSPIFDKEKAQRRLQQARLIGEIGNQVADIARTEGEIAGEKARRDPTALNQARTA LEASGKPFTEKDVAQRAYNTGMRDSGFGTGGQYQQAIQAATAAVQGLAGGNLQAALAGGAAPYISEIIKQSTPDGAGRVA AHAVVNAALAAAQGNHPLAGAAGAASGEIVGHAGHGDIPETGR
Sequences:
>Translated_363_residues MANVGNNLTLRSEQGVDSYEAKQSSFSAGGSIGFGNGSLGIAASRDKMHSDYASVESQSGIFAGTGGFDITVGNHTQLDG AAIASAAGQENNRLDSGTLGFADIDNRAEFRAQHQGFGLSSGGSIGGQFAGNMANSLLAGANHQERARGTTQSAIADGAI VVRDRANQQQDVAGLARDTEQAHQPLSPIFDKEKAQRRLQQARLIGEIGNQVADIARTEGEIAGEKARRDPTALNQARTA LEASGKPFTEKDVAQRAYNTGMRDSGFGTGGQYQQAIQAATAAVQGLAGGNLQAALAGGAAPYISEIIKQSTPDGAGRVA AHAVVNAALAAAQGNHPLAGAAGAASGEIVGHAGHGDIPETGR >Mature_362_residues ANVGNNLTLRSEQGVDSYEAKQSSFSAGGSIGFGNGSLGIAASRDKMHSDYASVESQSGIFAGTGGFDITVGNHTQLDGA AIASAAGQENNRLDSGTLGFADIDNRAEFRAQHQGFGLSSGGSIGGQFAGNMANSLLAGANHQERARGTTQSAIADGAIV VRDRANQQQDVAGLARDTEQAHQPLSPIFDKEKAQRRLQQARLIGEIGNQVADIARTEGEIAGEKARRDPTALNQARTAL EASGKPFTEKDVAQRAYNTGMRDSGFGTGGQYQQAIQAATAAVQGLAGGNLQAALAGGAAPYISEIIKQSTPDGAGRVAA HAVVNAALAAAQGNHPLAGAAGAASGEIVGHAGHGDIPETGR
Specific function: Unknown
COG id: COG3210
COG function: function code U; Large exoproteins involved in heme utilization or adhesion
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36900; Mature: 36768
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANVGNNLTLRSEQGVDSYEAKQSSFSAGGSIGFGNGSLGIAASRDKMHSDYASVESQSG CCCCCCCEEEECCCCCCHHHHHHHHCCCCCCEECCCCCCCEEECHHHHHHHHHHHHCCCC IFAGTGGFDITVGNHTQLDGAAIASAAGQENNRLDSGTLGFADIDNRAEFRAQHQGFGLS EEEECCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC SGGSIGGQFAGNMANSLLAGANHQERARGTTQSAIADGAIVVRDRANQQQDVAGLARDTE CCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHH QAHQPLSPIFDKEKAQRRLQQARLIGEIGNQVADIARTEGEIAGEKARRDPTALNQARTA HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHCCCHHHHHHHHHH LEASGKPFTEKDVAQRAYNTGMRDSGFGTGGQYQQAIQAATAAVQGLAGGNLQAALAGGA HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCC APYISEIIKQSTPDGAGRVAAHAVVNAALAAAQGNHPLAGAAGAASGEIVGHAGHGDIPE CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCC TGR CCC >Mature Secondary Structure ANVGNNLTLRSEQGVDSYEAKQSSFSAGGSIGFGNGSLGIAASRDKMHSDYASVESQSG CCCCCCEEEECCCCCCHHHHHHHHCCCCCCEECCCCCCCEEECHHHHHHHHHHHHCCCC IFAGTGGFDITVGNHTQLDGAAIASAAGQENNRLDSGTLGFADIDNRAEFRAQHQGFGLS EEEECCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC SGGSIGGQFAGNMANSLLAGANHQERARGTTQSAIADGAIVVRDRANQQQDVAGLARDTE CCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHH QAHQPLSPIFDKEKAQRRLQQARLIGEIGNQVADIARTEGEIAGEKARRDPTALNQARTA HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHCCCHHHHHHHHHH LEASGKPFTEKDVAQRAYNTGMRDSGFGTGGQYQQAIQAATAAVQGLAGGNLQAALAGGA HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCC APYISEIIKQSTPDGAGRVAAHAVVNAALAAAQGNHPLAGAAGAASGEIVGHAGHGDIPE CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCC TGR CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA