| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238921151
Identifier: 238921151
GI number: 238921151
Start: 3173781
End: 3174665
Strand: Direct
Name: 238921151
Synonym: NT01EI_3292
Alternate gene names: NA
Gene position: 3173781-3174665 (Clockwise)
Preceding gene: 238921150
Following gene: 238921152
Centisome position: 83.25
GC content: 46.78
Gene sequence:
>885_bases ATGAACAAGAACAATCAATTACTTCTGGGATCGTTTATTGCACTGTCGCTGACCTCCCTCTGTGCGCAAGCGGCCAATAT TAATACCATATTTTCCTGGGAAACCGCCGACTACGATACGCCTGCGAACTATTCGGGTTACCGCTTAGATATCAATATTA ACCCAACTAAATCAAACTGGTATTTTGATGCCGGACTACGTCAGCGTGAAGCCGATAACAACAGCCGCTATCAGCGTTTG GATCTCCAGGCGGGCTATCGCTACAAGATCAATAACGGTTGGATCCAGCCCAGCTTCAAGGTACGCCAGGATACTACCTC CTATGACAATGGCAACCGCCTCACCGTCGATTTCTATAGCACCAAGACCTCCTATTACTACAACCTCTCCAACAGCTGGG CGCTGGCGGGCAGCGGCATGTTCAGCATCGAAAAGAAAGAGGATCTGAAGAAAGGGCTGACCACCAACACCGATTATCTG TCATGGGAATTCGAGCCGGGTATTCGTTACTTTATTACTCCCAATATCAATACTACCCTGGCCTATTTCCAAGGTGGCAA GCACGCCAATAAGCAGAATGAGTTTGACACCCGTGAAATCCAACGCAATCAGCAGGTGCGTTTATATTTAAACTGGAACA CCCCCATCGGCTTAGTCATTTCACCTTCAACCCGTCAATCAGTATTCGGCGAAATTACCGAGCGTAATGCCCTGGGTGAT GTGATCAAGAAAGATATGTCACGCTACACATTGCAGCTGGCTTACCCGATTAATAATCAGTGGCGTGTCATGACTGAGTA TTATCACGAAAAAATCAAAACCAAAGATAGCGATAAGAAAACCGAGTACGACTACTTTAAGGTTGCCGTACGCGCCAGTT TCTAA
Upstream 100 bases:
>100_bases CGATAGTAAGGGCAGCGATGGCTTTACGTGCGAAAGACAACCATAACAATATAAACAAAAGCATTAATTCATCACGGTTG ATATTATCGTAAGGAATGCT
Downstream 100 bases:
>100_bases TCCACTAATAAGAATACCAACACCGAGGTTATCACGTGAATAAATACCAGCATCTTTTCCTTTATACCGCCATTGTCTCT GCACTCTATAATACTGCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 294; Mature: 294
Protein sequence:
>294_residues MNKNNQLLLGSFIALSLTSLCAQAANINTIFSWETADYDTPANYSGYRLDININPTKSNWYFDAGLRQREADNNSRYQRL DLQAGYRYKINNGWIQPSFKVRQDTTSYDNGNRLTVDFYSTKTSYYYNLSNSWALAGSGMFSIEKKEDLKKGLTTNTDYL SWEFEPGIRYFITPNINTTLAYFQGGKHANKQNEFDTREIQRNQQVRLYLNWNTPIGLVISPSTRQSVFGEITERNALGD VIKKDMSRYTLQLAYPINNQWRVMTEYYHEKIKTKDSDKKTEYDYFKVAVRASF
Sequences:
>Translated_294_residues MNKNNQLLLGSFIALSLTSLCAQAANINTIFSWETADYDTPANYSGYRLDININPTKSNWYFDAGLRQREADNNSRYQRL DLQAGYRYKINNGWIQPSFKVRQDTTSYDNGNRLTVDFYSTKTSYYYNLSNSWALAGSGMFSIEKKEDLKKGLTTNTDYL SWEFEPGIRYFITPNINTTLAYFQGGKHANKQNEFDTREIQRNQQVRLYLNWNTPIGLVISPSTRQSVFGEITERNALGD VIKKDMSRYTLQLAYPINNQWRVMTEYYHEKIKTKDSDKKTEYDYFKVAVRASF >Mature_294_residues MNKNNQLLLGSFIALSLTSLCAQAANINTIFSWETADYDTPANYSGYRLDININPTKSNWYFDAGLRQREADNNSRYQRL DLQAGYRYKINNGWIQPSFKVRQDTTSYDNGNRLTVDFYSTKTSYYYNLSNSWALAGSGMFSIEKKEDLKKGLTTNTDYL SWEFEPGIRYFITPNINTTLAYFQGGKHANKQNEFDTREIQRNQQVRLYLNWNTPIGLVISPSTRQSVFGEITERNALGD VIKKDMSRYTLQLAYPINNQWRVMTEYYHEKIKTKDSDKKTEYDYFKVAVRASF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34285; Mature: 34285
Theoretical pI: Translated: 9.38; Mature: 9.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKNNQLLLGSFIALSLTSLCAQAANINTIFSWETADYDTPANYSGYRLDININPTKSNW CCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCE YFDAGLRQREADNNSRYQRLDLQAGYRYKINNGWIQPSFKVRQDTTSYDNGNRLTVDFYS EEECCCCCCCCCCCCCEEEEEECCCCEEEECCCEECCCEEEECCCCCCCCCCEEEEEEEE TKTSYYYNLSNSWALAGSGMFSIEKKEDLKKGLTTNTDYLSWEFEPGIRYFITPNINTTL CCEEEEEECCCCEEEECCCEEEECCHHHHHHCCCCCCCEEEEEECCCCEEEECCCCCEEE AYFQGGKHANKQNEFDTREIQRNQQVRLYLNWNTPIGLVISPSTRQSVFGEITERNALGD EEEECCCCCCCCCCCCHHHHCCCCEEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHH VIKKDMSRYTLQLAYPINNQWRVMTEYYHEKIKTKDSDKKTEYDYFKVAVRASF HHHHHHCEEEEEEEECCCCCEEEHHHHHHHHHCCCCCCCCCCCEEEEEEEEECC >Mature Secondary Structure MNKNNQLLLGSFIALSLTSLCAQAANINTIFSWETADYDTPANYSGYRLDININPTKSNW CCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCE YFDAGLRQREADNNSRYQRLDLQAGYRYKINNGWIQPSFKVRQDTTSYDNGNRLTVDFYS EEECCCCCCCCCCCCCEEEEEECCCCEEEECCCEECCCEEEECCCCCCCCCCEEEEEEEE TKTSYYYNLSNSWALAGSGMFSIEKKEDLKKGLTTNTDYLSWEFEPGIRYFITPNINTTL CCEEEEEECCCCEEEECCCEEEECCHHHHHHCCCCCCCEEEEEECCCCEEEECCCCCEEE AYFQGGKHANKQNEFDTREIQRNQQVRLYLNWNTPIGLVISPSTRQSVFGEITERNALGD EEEECCCCCCCCCCCCHHHHCCCCEEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHH VIKKDMSRYTLQLAYPINNQWRVMTEYYHEKIKTKDSDKKTEYDYFKVAVRASF HHHHHHCEEEEEEEECCCCCEEEHHHHHHHHHCCCCCCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA