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The map label for this gene is yeaM [H]

Identifier: 238920983

GI number: 238920983

Start: 3001864

End: 3002655

Strand: Direct

Name: yeaM [H]

Synonym: NT01EI_3113

Alternate gene names: 238920983

Gene position: 3001864-3002655 (Clockwise)

Preceding gene: 238920980

Following gene: 238920986

Centisome position: 78.74

GC content: 58.08

Gene sequence:

>792_bases
ATGATCGGCCTCGGACTTGATGGCTATGAACCAGACCTTCACCATGACGCCGCGGTGGCATTCCGCATCCAGGTAACCAC
TGACGAGCAGTTTACGCCTGAGCACCAACACCGTAAGGGGCAACTTATTCTGGCGCTACACGGCGCGATTACCTGCGAGG
TAGAGGAGGCCATGTGGATGGTGCCACCGCAGTATGCGGTATGGGTTCCCGGACAGACGCGGCACAGTAACCACGCCACA
CCCAATGCCACGCTGTGCTTTTTGTTTATTGAACCGAGCGCGGCGGCCATGCCCGCCCACTGCTGTACGCTCAAAATTGC
CCCCCTGGTGCGGGAGCTCATTTTAACGCTGGCGCAGCGTGAGCGCGTGGCGCGGGAACACCCTGCGACGCAACGCCTCA
TTCACGTGCTTTTCGATGAGTTGCCACAGCAGCCGCAGGAGCAACTGCACCTGCCCGTATCTAATCACCCCAAGATCCGC
CTGATGGTCGATACGATGGCCGCAGAGCCTGCGCAGTGGCAGACGCTAAGGCAGTGGGCAACACGCTTTGCCATGAGTGA
ACGCAACTTAGCGCGTCTGATTGAAAAAGAGACCGGGCTCAGCTTTCGCCACTGGCGACATCAGCTACAGCTGATACTGG
CGCTACAAATGCTCGTCTGCGGCCAAGCCGTTAATCAGGTAGCCCATGCGCTTGGCTATGAATCTACCACCGCTTTTATC
ACGATGTTTCGCAAGGGATTAGGGCAAACACCCGGGCGCTACCTCAATACGCTGGCAGCCAATACCCCGTAA

Upstream 100 bases:

>100_bases
TGATTTTCTCTGTCAACCTGAGGTAGCCACCACAATAACGTTTTTCATACTTGTTTTAATCAAGCTAAAGTGACAATTTA
TCGCTAATATCGGACAACAC

Downstream 100 bases:

>100_bases
CTGCGTCGGCTGATGCATATGGATAGGTAACCTGGCTATCCCTGGCATCGAGTTGGTGAGAATGTCGCGGGCCTACATCA
CGTCAATGATAAAAAGCAAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MIGLGLDGYEPDLHHDAAVAFRIQVTTDEQFTPEHQHRKGQLILALHGAITCEVEEAMWMVPPQYAVWVPGQTRHSNHAT
PNATLCFLFIEPSAAAMPAHCCTLKIAPLVRELILTLAQRERVAREHPATQRLIHVLFDELPQQPQEQLHLPVSNHPKIR
LMVDTMAAEPAQWQTLRQWATRFAMSERNLARLIEKETGLSFRHWRHQLQLILALQMLVCGQAVNQVAHALGYESTTAFI
TMFRKGLGQTPGRYLNTLAANTP

Sequences:

>Translated_263_residues
MIGLGLDGYEPDLHHDAAVAFRIQVTTDEQFTPEHQHRKGQLILALHGAITCEVEEAMWMVPPQYAVWVPGQTRHSNHAT
PNATLCFLFIEPSAAAMPAHCCTLKIAPLVRELILTLAQRERVAREHPATQRLIHVLFDELPQQPQEQLHLPVSNHPKIR
LMVDTMAAEPAQWQTLRQWATRFAMSERNLARLIEKETGLSFRHWRHQLQLILALQMLVCGQAVNQVAHALGYESTTAFI
TMFRKGLGQTPGRYLNTLAANTP
>Mature_263_residues
MIGLGLDGYEPDLHHDAAVAFRIQVTTDEQFTPEHQHRKGQLILALHGAITCEVEEAMWMVPPQYAVWVPGQTRHSNHAT
PNATLCFLFIEPSAAAMPAHCCTLKIAPLVRELILTLAQRERVAREHPATQRLIHVLFDELPQQPQEQLHLPVSNHPKIR
LMVDTMAAEPAQWQTLRQWATRFAMSERNLARLIEKETGLSFRHWRHQLQLILALQMLVCGQAVNQVAHALGYESTTAFI
TMFRKGLGQTPGRYLNTLAANTP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=260, Percent_Identity=71.9230769230769, Blast_Score=358, Evalue=1e-100,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29731; Mature: 29731

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGLGLDGYEPDLHHDAAVAFRIQVTTDEQFTPEHQHRKGQLILALHGAITCEVEEAMWM
CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHCCCCCEEEEECCEEEEEEHHHEEE
VPPQYAVWVPGQTRHSNHATPNATLCFLFIEPSAAAMPAHCCTLKIAPLVRELILTLAQR
CCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHEEHHHHHHHHHHHHHHH
ERVAREHPATQRLIHVLFDELPQQPQEQLHLPVSNHPKIRLMVDTMAAEPAQWQTLRQWA
HHHHHHCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHH
TRFAMSERNLARLIEKETGLSFRHWRHQLQLILALQMLVCGQAVNQVAHALGYESTTAFI
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
TMFRKGLGQTPGRYLNTLAANTP
HHHHHHCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MIGLGLDGYEPDLHHDAAVAFRIQVTTDEQFTPEHQHRKGQLILALHGAITCEVEEAMWM
CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHCCCCCEEEEECCEEEEEEHHHEEE
VPPQYAVWVPGQTRHSNHATPNATLCFLFIEPSAAAMPAHCCTLKIAPLVRELILTLAQR
CCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHEEHHHHHHHHHHHHHHH
ERVAREHPATQRLIHVLFDELPQQPQEQLHLPVSNHPKIRLMVDTMAAEPAQWQTLRQWA
HHHHHHCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHH
TRFAMSERNLARLIEKETGLSFRHWRHQLQLILALQMLVCGQAVNQVAHALGYESTTAFI
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
TMFRKGLGQTPGRYLNTLAANTP
HHHHHHCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]