| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is srmB [H]
Identifier: 238920914
GI number: 238920914
Start: 2930815
End: 2932161
Strand: Direct
Name: srmB [H]
Synonym: NT01EI_3042
Alternate gene names: 238920914
Gene position: 2930815-2932161 (Clockwise)
Preceding gene: 238920900
Following gene: 238920917
Centisome position: 76.88
GC content: 62.14
Gene sequence:
>1347_bases ATGACAGCAACCAACTTTTCCGAACTCGAACTCGACGAGCGCCTGCTCGACGCCCTGCGCGACAAAGGCTATGAGCGCCC GACCGCCATCCAGATCGCCGCCATCCCGCCCGCCATGGACGGACGGGACGTTTTGGGTTCCGCACCAACAGGAACCGGCA AGACCGCCGCCTTCCTGCTGCCCGCGCTGCAGCACCTGCTCGACTTCCCGCGTAAGAAGTCCGGCCCGCCGCGCGTTCTG ATCCTGACGCCGACCCGCGAACTTGCCATGCAAGTGGCCGATCAGGCCCGGGAGCTGGCACGCCACACCAGCCTGGACAT CACCACCATCACCGGCGGCGTTTCCTATATTAACCACGCCGAGATCTTTAACACCAACCAGGATCTGGTGGTCGCCACGC CGGGGCGTCTGTTGCAGTATATCAAAGAAGAGAACTTTGACTGCCGGGCGGTAGAGACCCTGATCCTCGATGAAGCTGAC CGCATGCTGGACATGGGCTTTGCCAGCGACATCGAAACCGTCTCCGCCGAAACCCGCTGGCGTCGGCAGACCCTGCTGTT CTCCGCCACCCTGGAGTCCGACGCGGTTCACGACTTTGCCGCTCGCCTGCTCAACGATCCCGTTGACGTCAGCGCCGAGC CGCCGCGCCGTGAGCGTAAGAAGATCCAGCAGTGGTACTATCGTGCCGATAGCCTGAAACACAAGACCGCCCTGCTGTGT AATCTGCTGCGCCAGCCGGACGTCACCAAGTCCGTTATCTTTGTGCGCAAGCGTGAGCGCGTGCATGAGCTGGTCACCTG GCTGCATCAGGCCGGTATCCAGGCCTGTTTCCTGGAGGGCGAAATGGTGCAGGCCAAGCGTAACGAGGCCATTAAGCGCA TGCTGGACGGCCGGGTCAACGTGCTGGTCGCCACCGACGTCGCCGCCCGCGGTCTGGATATTCCGGATATCAGCCACGTG TTCAACTTTGACATGCCACGCAGCGCCGATGTCTACCTGCACCGCATCGGGCGTACCGCACGCGCCGGGCGTAAGGGCAC CGCCATCTCCCTGATCGAGGCACACGACCAGCTGCTGCTCGGCAAGGTGAGCCGCTATGTGCAGGAACCGTTGAAGTCAC GCGTCGTCGATAATCTGCGCCCGGAAACCAAAGCGCCGAGCCTGAAGAACAAGGGTAAACCGTCGAAGAAGGTGCAGGCC AAGCGGGCGCAGAAAAAGCTCGACGAGCAGAAGAAAAAGGTCAAGACCAAAGTGCGCCACCGCGACAGTAAAAACATCGG AAAACGCCGCCAGCCCAACGCCCAGAGCAATCCCGCCACCGCGGGCGCCGAGGATAGCGGCGAATAA
Upstream 100 bases:
>100_bases CGGCTGCGCTGCAGGGCATGGGGGAGGCGCACATCGCGCTTTAATGGATGAATATAGTCGCCAACCCGTCTATAATCTGC GCCCCAAGCAGAGGTAGACC
Downstream 100 bases:
>100_bases GCCCGTGTCACCGCCGCCCGCGCGATGCGGGCGATAAAAAAGGAGCCTTAGACCTGATGGCTCCCCCATAAATAAAGGCG GACATAGAGAGTTGTGATCT
Product: ATP-dependent RNA helicase SrmB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 448; Mature: 447
Protein sequence:
>448_residues MTATNFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKSGPPRVL ILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHAEIFNTNQDLVVATPGRLLQYIKEENFDCRAVETLILDEAD RMLDMGFASDIETVSAETRWRRQTLLFSATLESDAVHDFAARLLNDPVDVSAEPPRRERKKIQQWYYRADSLKHKTALLC NLLRQPDVTKSVIFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVLVATDVAARGLDIPDISHV FNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQLLLGKVSRYVQEPLKSRVVDNLRPETKAPSLKNKGKPSKKVQA KRAQKKLDEQKKKVKTKVRHRDSKNIGKRRQPNAQSNPATAGAEDSGE
Sequences:
>Translated_448_residues MTATNFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKSGPPRVL ILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHAEIFNTNQDLVVATPGRLLQYIKEENFDCRAVETLILDEAD RMLDMGFASDIETVSAETRWRRQTLLFSATLESDAVHDFAARLLNDPVDVSAEPPRRERKKIQQWYYRADSLKHKTALLC NLLRQPDVTKSVIFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVLVATDVAARGLDIPDISHV FNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQLLLGKVSRYVQEPLKSRVVDNLRPETKAPSLKNKGKPSKKVQA KRAQKKLDEQKKKVKTKVRHRDSKNIGKRRQPNAQSNPATAGAEDSGE >Mature_447_residues TATNFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKSGPPRVLI LTPTRELAMQVADQARELARHTSLDITTITGGVSYINHAEIFNTNQDLVVATPGRLLQYIKEENFDCRAVETLILDEADR MLDMGFASDIETVSAETRWRRQTLLFSATLESDAVHDFAARLLNDPVDVSAEPPRRERKKIQQWYYRADSLKHKTALLCN LLRQPDVTKSVIFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVLVATDVAARGLDIPDISHVF NFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQLLLGKVSRYVQEPLKSRVVDNLRPETKAPSLKNKGKPSKKVQAK RAQKKLDEQKKKVKTKVRHRDSKNIGKRRQPNAQSNPATAGAEDSGE
Specific function: RNA-dependent ATPase activity. Acts in 50S ribosomal subunit biogenesis at low temperatures, acting before DeaD/CsdA. Suppressor of a mutant defective in 50S ribosomal subunit assembly. Probably interacts with 23S ribosomal RNA [H]
COG id: COG0513
COG function: function code LKJ; Superfamily II DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI224593278, Length=375, Percent_Identity=36.5333333333333, Blast_Score=244, Evalue=1e-64, Organism=Homo sapiens, GI45446747, Length=368, Percent_Identity=37.2282608695652, Blast_Score=240, Evalue=2e-63, Organism=Homo sapiens, GI45446743, Length=368, Percent_Identity=37.2282608695652, Blast_Score=240, Evalue=2e-63, Organism=Homo sapiens, GI20149629, Length=368, Percent_Identity=35.3260869565217, Blast_Score=233, Evalue=3e-61, Organism=Homo sapiens, GI31542656, Length=382, Percent_Identity=36.1256544502618, Blast_Score=227, Evalue=2e-59, Organism=Homo sapiens, GI21071032, Length=368, Percent_Identity=37.2282608695652, Blast_Score=216, Evalue=3e-56, Organism=Homo sapiens, GI164419743, Length=393, Percent_Identity=33.8422391857506, Blast_Score=211, Evalue=2e-54, Organism=Homo sapiens, GI7661920, Length=362, Percent_Identity=33.1491712707182, Blast_Score=211, Evalue=2e-54, Organism=Homo sapiens, GI13514831, Length=353, Percent_Identity=37.6770538243626, Blast_Score=210, Evalue=2e-54, Organism=Homo sapiens, GI51094101, Length=393, Percent_Identity=33.8422391857506, Blast_Score=210, Evalue=2e-54, Organism=Homo sapiens, GI148613856, Length=351, Percent_Identity=35.8974358974359, Blast_Score=209, Evalue=5e-54, Organism=Homo sapiens, GI38201710, Length=351, Percent_Identity=35.8974358974359, Blast_Score=209, Evalue=5e-54, Organism=Homo sapiens, GI262118318, Length=360, Percent_Identity=35, Blast_Score=209, Evalue=6e-54, Organism=Homo sapiens, GI262231852, Length=360, Percent_Identity=35, Blast_Score=207, Evalue=1e-53, Organism=Homo sapiens, GI216548263, Length=360, Percent_Identity=35, Blast_Score=207, Evalue=1e-53, Organism=Homo sapiens, GI13518015, Length=360, Percent_Identity=35, Blast_Score=207, Evalue=1e-53, Organism=Homo sapiens, GI41327773, Length=343, Percent_Identity=35.5685131195335, Blast_Score=206, Evalue=3e-53, Organism=Homo sapiens, GI4758138, Length=356, Percent_Identity=35.1123595505618, Blast_Score=204, Evalue=2e-52, Organism=Homo sapiens, GI41327771, Length=387, Percent_Identity=31.5245478036176, Blast_Score=202, Evalue=4e-52, Organism=Homo sapiens, GI41327776, Length=368, Percent_Identity=32.0652173913043, Blast_Score=201, Evalue=9e-52, Organism=Homo sapiens, GI222352149, Length=352, Percent_Identity=34.375, Blast_Score=200, Evalue=2e-51, Organism=Homo sapiens, GI188035877, Length=371, Percent_Identity=35.0404312668464, Blast_Score=199, Evalue=3e-51, Organism=Homo sapiens, GI55749865, Length=353, Percent_Identity=33.4277620396601, Blast_Score=195, Evalue=8e-50, Organism=Homo sapiens, GI164664518, Length=376, Percent_Identity=32.4468085106383, Blast_Score=194, Evalue=1e-49, Organism=Homo sapiens, GI21040371, Length=355, Percent_Identity=32.3943661971831, Blast_Score=192, Evalue=5e-49, Organism=Homo sapiens, GI169881239, Length=366, Percent_Identity=33.3333333333333, Blast_Score=191, Evalue=2e-48, Organism=Homo sapiens, GI13514809, Length=366, Percent_Identity=33.3333333333333, Blast_Score=191, Evalue=2e-48, Organism=Homo sapiens, GI9506931, Length=398, Percent_Identity=32.1608040201005, Blast_Score=190, Evalue=2e-48, Organism=Homo sapiens, GI87196351, Length=371, Percent_Identity=32.8840970350404, Blast_Score=189, Evalue=5e-48, Organism=Homo sapiens, GI301171467, Length=371, Percent_Identity=32.8840970350404, Blast_Score=189, Evalue=5e-48, Organism=Homo sapiens, GI301171475, Length=371, Percent_Identity=32.8840970350404, Blast_Score=189, Evalue=6e-48, Organism=Homo sapiens, GI38327634, Length=358, Percent_Identity=34.3575418994413, Blast_Score=186, Evalue=6e-47, Organism=Homo sapiens, GI13129006, Length=386, Percent_Identity=31.8652849740933, Blast_Score=184, Evalue=1e-46, Organism=Homo sapiens, GI4758112, Length=353, Percent_Identity=31.4447592067989, Blast_Score=184, Evalue=2e-46, Organism=Homo sapiens, GI18375623, Length=353, Percent_Identity=31.4447592067989, Blast_Score=184, Evalue=2e-46, Organism=Homo sapiens, GI6005743, Length=391, Percent_Identity=31.2020460358056, Blast_Score=182, Evalue=5e-46, Organism=Homo sapiens, GI38569505, Length=369, Percent_Identity=32.520325203252, Blast_Score=182, Evalue=6e-46, Organism=Homo sapiens, GI38569503, Length=369, Percent_Identity=32.520325203252, Blast_Score=182, Evalue=6e-46, Organism=Homo sapiens, GI8922886, Length=391, Percent_Identity=30.9462915601023, Blast_Score=181, Evalue=9e-46, Organism=Homo sapiens, GI83700235, Length=364, Percent_Identity=32.1428571428571, Blast_Score=181, Evalue=1e-45, Organism=Homo sapiens, GI4503529, Length=366, Percent_Identity=31.6939890710383, Blast_Score=177, Evalue=1e-44, Organism=Homo sapiens, GI62241022, Length=370, Percent_Identity=31.3513513513514, Blast_Score=173, Evalue=3e-43, Organism=Homo sapiens, GI50659095, Length=374, Percent_Identity=30.4812834224599, Blast_Score=171, Evalue=1e-42, Organism=Homo sapiens, GI41327779, Length=417, Percent_Identity=32.6139088729017, Blast_Score=170, Evalue=3e-42, Organism=Homo sapiens, GI164419732, Length=363, Percent_Identity=31.129476584022, Blast_Score=169, Evalue=4e-42, Organism=Homo sapiens, GI62241024, Length=349, Percent_Identity=31.2320916905444, Blast_Score=164, Evalue=1e-40, Organism=Homo sapiens, GI17505907, Length=408, Percent_Identity=30.3921568627451, Blast_Score=152, Evalue=5e-37, Organism=Homo sapiens, GI256223453, Length=355, Percent_Identity=28.169014084507, Blast_Score=145, Evalue=1e-34, Organism=Homo sapiens, GI9966805, Length=340, Percent_Identity=29.7058823529412, Blast_Score=144, Evalue=2e-34, Organism=Homo sapiens, GI154759257, Length=401, Percent_Identity=28.6783042394015, Blast_Score=134, Evalue=1e-31, Organism=Homo sapiens, GI256773275, Length=383, Percent_Identity=30.2872062663185, Blast_Score=123, Evalue=4e-28, Organism=Homo sapiens, GI4826686, Length=334, Percent_Identity=26.3473053892216, Blast_Score=111, Evalue=1e-24, Organism=Homo sapiens, GI20336298, Length=220, Percent_Identity=34.5454545454545, Blast_Score=108, Evalue=8e-24, Organism=Escherichia coli, GI1788930, Length=438, Percent_Identity=78.0821917808219, Blast_Score=669, Evalue=0.0, Organism=Escherichia coli, GI87082221, Length=406, Percent_Identity=38.6699507389163, Blast_Score=272, Evalue=3e-74, Organism=Escherichia coli, GI1787016, Length=387, Percent_Identity=37.7260981912145, Blast_Score=254, Evalue=9e-69, Organism=Escherichia coli, GI1790214, Length=380, Percent_Identity=36.8421052631579, Blast_Score=238, Evalue=7e-64, Organism=Escherichia coli, GI1787605, Length=355, Percent_Identity=40, Blast_Score=209, Evalue=4e-55, Organism=Caenorhabditis elegans, GI17552642, Length=378, Percent_Identity=39.1534391534392, Blast_Score=249, Evalue=3e-66, Organism=Caenorhabditis elegans, GI17555296, Length=353, Percent_Identity=38.2436260623229, Blast_Score=238, Evalue=6e-63, Organism=Caenorhabditis elegans, GI71999644, Length=358, Percent_Identity=38.8268156424581, Blast_Score=231, Evalue=8e-61, Organism=Caenorhabditis elegans, GI71999646, Length=358, Percent_Identity=38.8268156424581, Blast_Score=230, Evalue=1e-60, Organism=Caenorhabditis elegans, GI17510559, Length=400, Percent_Identity=34, Blast_Score=224, Evalue=9e-59, Organism=Caenorhabditis elegans, GI86570094, Length=366, Percent_Identity=36.0655737704918, Blast_Score=217, Evalue=1e-56, Organism=Caenorhabditis elegans, GI71995724, Length=362, Percent_Identity=33.7016574585635, Blast_Score=215, Evalue=3e-56, Organism=Caenorhabditis elegans, GI17507121, Length=362, Percent_Identity=33.4254143646409, Blast_Score=215, Evalue=5e-56, Organism=Caenorhabditis elegans, GI115533224, Length=355, Percent_Identity=37.1830985915493, Blast_Score=214, Evalue=5e-56, Organism=Caenorhabditis elegans, GI71987143, Length=364, Percent_Identity=34.0659340659341, Blast_Score=212, Evalue=3e-55, Organism=Caenorhabditis elegans, GI17507877, Length=376, Percent_Identity=35.9042553191489, Blast_Score=209, Evalue=3e-54, Organism=Caenorhabditis elegans, GI32565321, Length=384, Percent_Identity=33.3333333333333, Blast_Score=207, Evalue=1e-53, Organism=Caenorhabditis elegans, GI17507945, Length=409, Percent_Identity=34.9633251833741, Blast_Score=206, Evalue=3e-53, Organism=Caenorhabditis elegans, GI17507879, Length=403, Percent_Identity=34.2431761786601, Blast_Score=204, Evalue=8e-53, Organism=Caenorhabditis elegans, GI17552114, Length=373, Percent_Identity=32.171581769437, Blast_Score=201, Evalue=5e-52, Organism=Caenorhabditis elegans, GI17509811, Length=382, Percent_Identity=34.0314136125654, Blast_Score=199, Evalue=3e-51, Organism=Caenorhabditis elegans, GI17510309, Length=364, Percent_Identity=31.8681318681319, Blast_Score=199, Evalue=3e-51, Organism=Caenorhabditis elegans, GI17510307, Length=363, Percent_Identity=31.9559228650138, Blast_Score=199, Evalue=3e-51, Organism=Caenorhabditis elegans, GI71995514, Length=369, Percent_Identity=31.7073170731707, Blast_Score=199, Evalue=3e-51, Organism=Caenorhabditis elegans, GI17507881, Length=379, Percent_Identity=33.509234828496, Blast_Score=195, Evalue=4e-50, Organism=Caenorhabditis elegans, GI17537549, Length=362, Percent_Identity=34.2541436464088, Blast_Score=195, Evalue=4e-50, Organism=Caenorhabditis elegans, GI71995718, Length=368, Percent_Identity=33.4239130434783, Blast_Score=194, Evalue=9e-50, Organism=Caenorhabditis elegans, GI115532548, Length=432, Percent_Identity=32.1759259259259, Blast_Score=187, Evalue=1e-47, Organism=Caenorhabditis elegans, GI17505370, Length=360, Percent_Identity=35.2777777777778, Blast_Score=185, Evalue=5e-47, Organism=Caenorhabditis elegans, GI115532546, Length=386, Percent_Identity=33.419689119171, Blast_Score=184, Evalue=8e-47, Organism=Caenorhabditis elegans, GI17507641, Length=386, Percent_Identity=31.3471502590674, Blast_Score=176, Evalue=2e-44, Organism=Caenorhabditis elegans, GI71982858, Length=354, Percent_Identity=30.7909604519774, Blast_Score=175, Evalue=5e-44, Organism=Caenorhabditis elegans, GI32564046, Length=373, Percent_Identity=31.3672922252011, Blast_Score=169, Evalue=3e-42, Organism=Caenorhabditis elegans, GI193206561, Length=349, Percent_Identity=28.9398280802292, Blast_Score=166, Evalue=2e-41, Organism=Caenorhabditis elegans, GI17556951, Length=349, Percent_Identity=33.2378223495702, Blast_Score=164, Evalue=1e-40, Organism=Caenorhabditis elegans, GI25148203, Length=416, Percent_Identity=25.2403846153846, Blast_Score=160, Evalue=1e-39, Organism=Caenorhabditis elegans, GI71990816, Length=376, Percent_Identity=31.3829787234043, Blast_Score=158, Evalue=6e-39, Organism=Caenorhabditis elegans, GI193208216, Length=380, Percent_Identity=31.3157894736842, Blast_Score=156, Evalue=2e-38, Organism=Caenorhabditis elegans, GI17508543, Length=380, Percent_Identity=27.6315789473684, Blast_Score=155, Evalue=3e-38, Organism=Caenorhabditis elegans, GI17536099, Length=383, Percent_Identity=29.7650130548303, Blast_Score=151, Evalue=7e-37, Organism=Caenorhabditis elegans, GI17553716, Length=362, Percent_Identity=29.5580110497238, Blast_Score=151, Evalue=8e-37, Organism=Caenorhabditis elegans, GI17536101, Length=383, Percent_Identity=29.7650130548303, Blast_Score=150, Evalue=9e-37, Organism=Caenorhabditis elegans, GI17536103, Length=385, Percent_Identity=29.8701298701299, Blast_Score=150, Evalue=2e-36, Organism=Caenorhabditis elegans, GI25148205, Length=343, Percent_Identity=23.3236151603499, Blast_Score=111, Evalue=7e-25, Organism=Caenorhabditis elegans, GI71997889, Length=371, Percent_Identity=25.3369272237197, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71982862, Length=207, Percent_Identity=29.4685990338164, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI25148291, Length=388, Percent_Identity=24.2268041237113, Blast_Score=100, Evalue=3e-21, Organism=Caenorhabditis elegans, GI71987152, Length=89, Percent_Identity=40.4494382022472, Blast_Score=80, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6323021, Length=487, Percent_Identity=33.4702258726899, Blast_Score=256, Evalue=4e-69, Organism=Saccharomyces cerevisiae, GI6324217, Length=374, Percent_Identity=34.4919786096257, Blast_Score=221, Evalue=2e-58, Organism=Saccharomyces cerevisiae, GI6325138, Length=380, Percent_Identity=35, Blast_Score=218, Evalue=1e-57, Organism=Saccharomyces cerevisiae, GI6321856, Length=384, Percent_Identity=34.375, Blast_Score=211, Evalue=2e-55, Organism=Saccharomyces cerevisiae, GI6321360, Length=365, Percent_Identity=36.4383561643836, Blast_Score=209, Evalue=7e-55, Organism=Saccharomyces cerevisiae, GI6324778, Length=377, Percent_Identity=34.2175066312997, Blast_Score=209, Evalue=8e-55, Organism=Saccharomyces cerevisiae, GI6320041, Length=363, Percent_Identity=33.6088154269972, Blast_Score=209, Evalue=1e-54, Organism=Saccharomyces cerevisiae, GI6320224, Length=372, Percent_Identity=33.0645161290323, Blast_Score=206, Evalue=5e-54, Organism=Saccharomyces cerevisiae, GI6320173, Length=447, Percent_Identity=30.8724832214765, Blast_Score=202, Evalue=8e-53, Organism=Saccharomyces cerevisiae, GI6323947, Length=356, Percent_Identity=36.2359550561798, Blast_Score=202, Evalue=1e-52, Organism=Saccharomyces cerevisiae, GI6322912, Length=351, Percent_Identity=35.3276353276353, Blast_Score=197, Evalue=2e-51, Organism=Saccharomyces cerevisiae, GI6322323, Length=351, Percent_Identity=35.3276353276353, Blast_Score=197, Evalue=2e-51, Organism=Saccharomyces cerevisiae, GI6321963, Length=378, Percent_Identity=35.4497354497354, Blast_Score=194, Evalue=3e-50, Organism=Saccharomyces cerevisiae, GI6322427, Length=366, Percent_Identity=32.7868852459016, Blast_Score=192, Evalue=9e-50, Organism=Saccharomyces cerevisiae, GI6320449, Length=397, Percent_Identity=31.9899244332494, Blast_Score=188, Evalue=2e-48, Organism=Saccharomyces cerevisiae, GI6319618, Length=411, Percent_Identity=31.6301703163017, Blast_Score=186, Evalue=7e-48, Organism=Saccharomyces cerevisiae, GI6320119, Length=369, Percent_Identity=32.2493224932249, Blast_Score=184, Evalue=3e-47, Organism=Saccharomyces cerevisiae, GI6323306, Length=416, Percent_Identity=28.125, Blast_Score=172, Evalue=1e-43, Organism=Saccharomyces cerevisiae, GI6324620, Length=384, Percent_Identity=30.2083333333333, Blast_Score=169, Evalue=7e-43, Organism=Saccharomyces cerevisiae, GI6319714, Length=441, Percent_Identity=27.891156462585, Blast_Score=162, Evalue=8e-41, Organism=Saccharomyces cerevisiae, GI6321267, Length=367, Percent_Identity=31.8801089918256, Blast_Score=160, Evalue=3e-40, Organism=Saccharomyces cerevisiae, GI6320400, Length=431, Percent_Identity=29.6983758700696, Blast_Score=156, Evalue=8e-39, Organism=Saccharomyces cerevisiae, GI6321111, Length=351, Percent_Identity=29.6296296296296, Blast_Score=154, Evalue=3e-38, Organism=Saccharomyces cerevisiae, GI6324366, Length=351, Percent_Identity=26.7806267806268, Blast_Score=117, Evalue=3e-27, Organism=Drosophila melanogaster, GI21356161, Length=376, Percent_Identity=38.031914893617, Blast_Score=259, Evalue=2e-69, Organism=Drosophila melanogaster, GI24662330, Length=367, Percent_Identity=37.6021798365123, Blast_Score=248, Evalue=8e-66, Organism=Drosophila melanogaster, GI24584399, Length=352, Percent_Identity=36.9318181818182, Blast_Score=234, Evalue=9e-62, Organism=Drosophila melanogaster, GI28574962, Length=352, Percent_Identity=37.5, Blast_Score=227, Evalue=1e-59, Organism=Drosophila melanogaster, GI281361218, Length=359, Percent_Identity=34.2618384401114, Blast_Score=223, Evalue=2e-58, Organism=Drosophila melanogaster, GI24644481, Length=359, Percent_Identity=34.2618384401114, Blast_Score=223, Evalue=2e-58, Organism=Drosophila melanogaster, GI24644479, Length=359, Percent_Identity=34.2618384401114, Blast_Score=223, Evalue=3e-58, Organism=Drosophila melanogaster, GI24644483, Length=359, Percent_Identity=34.2618384401114, Blast_Score=223, Evalue=3e-58, Organism=Drosophila melanogaster, GI24644487, Length=359, Percent_Identity=34.2618384401114, Blast_Score=223, Evalue=3e-58, Organism=Drosophila melanogaster, GI45551833, Length=359, Percent_Identity=34.2618384401114, Blast_Score=223, Evalue=3e-58, Organism=Drosophila melanogaster, GI24644485, Length=359, Percent_Identity=34.2618384401114, Blast_Score=223, Evalue=3e-58, Organism=Drosophila melanogaster, GI24585582, Length=367, Percent_Identity=34.6049046321526, Blast_Score=220, Evalue=2e-57, Organism=Drosophila melanogaster, GI18857967, Length=359, Percent_Identity=34.2618384401114, Blast_Score=217, Evalue=1e-56, Organism=Drosophila melanogaster, GI24645031, Length=362, Percent_Identity=33.7016574585635, Blast_Score=214, Evalue=8e-56, Organism=Drosophila melanogaster, GI28575014, Length=373, Percent_Identity=36.1930294906166, Blast_Score=213, Evalue=3e-55, Organism=Drosophila melanogaster, GI24642151, Length=364, Percent_Identity=33.7912087912088, Blast_Score=210, Evalue=2e-54, Organism=Drosophila melanogaster, GI17985987, Length=371, Percent_Identity=34.7708894878706, Blast_Score=209, Evalue=2e-54, Organism=Drosophila melanogaster, GI17977678, Length=359, Percent_Identity=34.8189415041783, Blast_Score=208, Evalue=5e-54, Organism=Drosophila melanogaster, GI24583279, Length=376, Percent_Identity=34.3085106382979, Blast_Score=207, Evalue=1e-53, Organism=Drosophila melanogaster, GI24583281, Length=376, Percent_Identity=34.3085106382979, Blast_Score=206, Evalue=2e-53, Organism=Drosophila melanogaster, GI21355075, Length=364, Percent_Identity=34.6153846153846, Blast_Score=205, Evalue=6e-53, Organism=Drosophila melanogaster, GI24584994, Length=437, Percent_Identity=31.1212814645309, Blast_Score=201, Evalue=8e-52, Organism=Drosophila melanogaster, GI281365720, Length=312, Percent_Identity=36.8589743589744, Blast_Score=185, Evalue=6e-47, Organism=Drosophila melanogaster, GI24582080, Length=362, Percent_Identity=33.9779005524862, Blast_Score=184, Evalue=9e-47, Organism=Drosophila melanogaster, GI24582078, Length=362, Percent_Identity=33.9779005524862, Blast_Score=184, Evalue=9e-47, Organism=Drosophila melanogaster, GI17136248, Length=362, Percent_Identity=33.9779005524862, Blast_Score=184, Evalue=9e-47, Organism=Drosophila melanogaster, GI24582075, Length=362, Percent_Identity=33.9779005524862, Blast_Score=184, Evalue=9e-47, Organism=Drosophila melanogaster, GI24642822, Length=368, Percent_Identity=32.6086956521739, Blast_Score=184, Evalue=1e-46, Organism=Drosophila melanogaster, GI28571808, Length=354, Percent_Identity=32.7683615819209, Blast_Score=175, Evalue=5e-44, Organism=Drosophila melanogaster, GI28571809, Length=354, Percent_Identity=32.7683615819209, Blast_Score=175, Evalue=5e-44, Organism=Drosophila melanogaster, GI24581954, Length=365, Percent_Identity=30.1369863013699, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI24581952, Length=365, Percent_Identity=30.1369863013699, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI24581956, Length=365, Percent_Identity=30.1369863013699, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI24643725, Length=391, Percent_Identity=31.9693094629156, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI17136814, Length=387, Percent_Identity=31.5245478036176, Blast_Score=172, Evalue=4e-43, Organism=Drosophila melanogaster, GI24666101, Length=413, Percent_Identity=29.7820823244552, Blast_Score=168, Evalue=7e-42, Organism=Drosophila melanogaster, GI20130173, Length=442, Percent_Identity=28.2805429864253, Blast_Score=161, Evalue=7e-40, Organism=Drosophila melanogaster, GI17647335, Length=356, Percent_Identity=29.2134831460674, Blast_Score=156, Evalue=2e-38, Organism=Drosophila melanogaster, GI21355559, Length=378, Percent_Identity=31.7460317460317, Blast_Score=150, Evalue=2e-36, Organism=Drosophila melanogaster, GI17136666, Length=398, Percent_Identity=27.6381909547739, Blast_Score=136, Evalue=3e-32, Organism=Drosophila melanogaster, GI19920478, Length=361, Percent_Identity=29.3628808864266, Blast_Score=132, Evalue=5e-31, Organism=Drosophila melanogaster, GI24640164, Length=378, Percent_Identity=26.7195767195767, Blast_Score=120, Evalue=2e-27, Organism=Drosophila melanogaster, GI24668515, Length=336, Percent_Identity=27.6785714285714, Blast_Score=104, Evalue=1e-22, Organism=Drosophila melanogaster, GI28571338, Length=204, Percent_Identity=29.9019607843137, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI18859659, Length=204, Percent_Identity=29.9019607843137, Blast_Score=87, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR000629 - InterPro: IPR014014 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]
EC number: =3.6.4.13 [H]
Molecular weight: Translated: 50263; Mature: 50132
Theoretical pI: Translated: 10.23; Mature: 10.23
Prosite motif: PS00039 DEAD_ATP_HELICASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTATNFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLL CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHCCCCCCCCCCHHHHHH PALQHLLDFPRKKSGPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHA HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH EIFNTNQDLVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETVSAETRW HHCCCCCCEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH RRQTLLFSATLESDAVHDFAARLLNDPVDVSAEPPRRERKKIQQWYYRADSLKHKTALLC HHHHHHEEEHHCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH NLLRQPDVTKSVIFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVN HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCE VLVATDVAARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQLLL EEEEECHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHH GKVSRYVQEPLKSRVVDNLRPETKAPSLKNKGKPSKKVQAKRAQKKLDEQKKKVKTKVRH HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RDSKNIGKRRQPNAQSNPATAGAEDSGE CCHHCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TATNFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLL CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHCCCCCCCCCCHHHHHH PALQHLLDFPRKKSGPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHA HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH EIFNTNQDLVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETVSAETRW HHCCCCCCEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH RRQTLLFSATLESDAVHDFAARLLNDPVDVSAEPPRRERKKIQQWYYRADSLKHKTALLC HHHHHHEEEHHCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH NLLRQPDVTKSVIFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVN HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCE VLVATDVAARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQLLL EEEEECHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHH GKVSRYVQEPLKSRVVDNLRPETKAPSLKNKGKPSKKVQAKRAQKKLDEQKKKVKTKVRH HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RDSKNIGKRRQPNAQSNPATAGAEDSGE CCHHCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2461520; 9278503 [H]