| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is folD
Identifier: 238920876
GI number: 238920876
Start: 2889494
End: 2890351
Strand: Direct
Name: folD
Synonym: NT01EI_3003
Alternate gene names: 238920876
Gene position: 2889494-2890351 (Clockwise)
Preceding gene: 238920875
Following gene: 238920877
Centisome position: 75.79
GC content: 64.34
Gene sequence:
>858_bases ATGGCAGCAAAAATTATTGATGGGAAAACGATTGCGCGACAAGTCAGAAGTGAAGTGGCGGCACGGGTGCGACAACGCCT GGCGGACGGCAAACGGGCACCGGGACTGGCGGTCATCATGGTCGGTGACGATCCGGCCTCCCGGATCTACGTCGGCAGCA AGCAGCGCGCCTGTGAAGAGGTCGGTTTTCTCTCCCGTTCCTATGCACTGCCGGACAGCACCGATGAGGCCCAGCTGCTT GCGCTGATCGATACGCTCAACGCCGACGCGGCCATCGATGGCATTCTGGTACAGCTGCCGCTGCCCGCCGGCATCGATAA CAGCCGGGTGCTGGAACGCATCCATCCGGACAAAGACGTGGATGGCTTTCACCCCTACAATCTGGGGCGCCTGTGCCAGC GCACCCCCAAGCTCCGTCCCTGCACCCCGCGCGGCATCATTACCCTGCTGGAGCGCTGCGGCATCGAGACCCAGGGGATG GATGCCGTGATGGTTGGCGCCTCCAACATCGTGGGAAGACCGATGGCGCTGGAGCTGCTGCTGGCCGGCTGCACCACCAC CATCACCCACAGTCGCACCCGTAACCTGCAGCAGCACGTCGAGCGCGCCGATCTGATCGTCGCCGCCGTCGGTAAACCCG GCTTTATCCCCGGCGAATGGGTCAAGCCCGGCGCAGTGGTGATCGATGTCGGCATCAATCGGCTGGAGAGCGGTAAGGTG GTCGGCGACGTCGACTTTACCGGTGCCGCCCAGCGCGCCAGCTGGATCACCCCGGTCCCCGGCGGCGTCGGGCCGATGAC CGTCGCCACCCTGATGCAGAACACCCTGCAGGCCTGTGAGGCGTTTCACGACGACTAA
Upstream 100 bases:
>100_bases CATCAGGCCTTGATTAAGATCAATATTCACCTGACAGCAAGCCAGCCATTTGCGACAATAGTGCCATCCCCGCAACATAA CCAGGATGGATCAACTCACC
Downstream 100 bases:
>100_bases GAGCCGCTAACAAAACCGAGTTGATTCGAATAACATCAATTCCCATATAGTAGGCATGACACGAAAAATCATCAGTAAGC AGCTCTGGAAATCCTTACAG
Product: bifunctional protein FolD
Products: NA
Alternate protein names: Methylenetetrahydrofolate dehydrogenase; Methenyltetrahydrofolate cyclohydrolase
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MAAKIIDGKTIARQVRSEVAARVRQRLADGKRAPGLAVIMVGDDPASRIYVGSKQRACEEVGFLSRSYALPDSTDEAQLL ALIDTLNADAAIDGILVQLPLPAGIDNSRVLERIHPDKDVDGFHPYNLGRLCQRTPKLRPCTPRGIITLLERCGIETQGM DAVMVGASNIVGRPMALELLLAGCTTTITHSRTRNLQQHVERADLIVAAVGKPGFIPGEWVKPGAVVIDVGINRLESGKV VGDVDFTGAAQRASWITPVPGGVGPMTVATLMQNTLQACEAFHDD
Sequences:
>Translated_285_residues MAAKIIDGKTIARQVRSEVAARVRQRLADGKRAPGLAVIMVGDDPASRIYVGSKQRACEEVGFLSRSYALPDSTDEAQLL ALIDTLNADAAIDGILVQLPLPAGIDNSRVLERIHPDKDVDGFHPYNLGRLCQRTPKLRPCTPRGIITLLERCGIETQGM DAVMVGASNIVGRPMALELLLAGCTTTITHSRTRNLQQHVERADLIVAAVGKPGFIPGEWVKPGAVVIDVGINRLESGKV VGDVDFTGAAQRASWITPVPGGVGPMTVATLMQNTLQACEAFHDD >Mature_284_residues AAKIIDGKTIARQVRSEVAARVRQRLADGKRAPGLAVIMVGDDPASRIYVGSKQRACEEVGFLSRSYALPDSTDEAQLLA LIDTLNADAAIDGILVQLPLPAGIDNSRVLERIHPDKDVDGFHPYNLGRLCQRTPKLRPCTPRGIITLLERCGIETQGMD AVMVGASNIVGRPMALELLLAGCTTTITHSRTRNLQQHVERADLIVAAVGKPGFIPGEWVKPGAVVIDVGINRLESGKVV GDVDFTGAAQRASWITPVPGGVGPMTVATLMQNTLQACEAFHDD
Specific function: Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
COG id: COG0190
COG function: function code H; 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family
Homologues:
Organism=Homo sapiens, GI94721354, Length=293, Percent_Identity=45.3924914675768, Blast_Score=231, Evalue=4e-61, Organism=Homo sapiens, GI222136639, Length=294, Percent_Identity=41.8367346938776, Blast_Score=224, Evalue=8e-59, Organism=Homo sapiens, GI222418558, Length=293, Percent_Identity=43.0034129692833, Blast_Score=219, Evalue=2e-57, Organism=Homo sapiens, GI36796743, Length=209, Percent_Identity=30.622009569378, Blast_Score=93, Evalue=2e-19, Organism=Escherichia coli, GI1786741, Length=284, Percent_Identity=76.7605633802817, Blast_Score=464, Evalue=1e-132, Organism=Caenorhabditis elegans, GI17568735, Length=290, Percent_Identity=39.6551724137931, Blast_Score=191, Evalue=5e-49, Organism=Saccharomyces cerevisiae, GI6321643, Length=298, Percent_Identity=45.3020134228188, Blast_Score=244, Evalue=2e-65, Organism=Saccharomyces cerevisiae, GI6319558, Length=285, Percent_Identity=41.7543859649123, Blast_Score=219, Evalue=6e-58, Organism=Saccharomyces cerevisiae, GI6322933, Length=314, Percent_Identity=24.5222929936306, Blast_Score=83, Evalue=4e-17, Organism=Drosophila melanogaster, GI17136816, Length=298, Percent_Identity=48.3221476510067, Blast_Score=245, Evalue=3e-65, Organism=Drosophila melanogaster, GI17136818, Length=298, Percent_Identity=48.3221476510067, Blast_Score=244, Evalue=3e-65, Organism=Drosophila melanogaster, GI24645718, Length=292, Percent_Identity=43.1506849315069, Blast_Score=219, Evalue=1e-57, Organism=Drosophila melanogaster, GI17137370, Length=292, Percent_Identity=43.1506849315069, Blast_Score=219, Evalue=1e-57, Organism=Drosophila melanogaster, GI62472483, Length=292, Percent_Identity=43.1506849315069, Blast_Score=219, Evalue=2e-57, Organism=Drosophila melanogaster, GI45551871, Length=292, Percent_Identity=43.1506849315069, Blast_Score=219, Evalue=2e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): FOLD_EDWI9 (C5B8V3)
Other databases:
- EMBL: CP001600 - RefSeq: YP_002934391.1 - GeneID: 7959302 - GenomeReviews: CP001600_GR - KEGG: eic:NT01EI_3003 - OMA: DVVYETA - ProtClustDB: CLSK2813526 - GO: GO:0005488 - HAMAP: MF_01576 - InterPro: IPR016040 - InterPro: IPR000672 - InterPro: IPR020630 - InterPro: IPR020867 - InterPro: IPR020631 - Gene3D: G3DSA:3.40.50.720 - PRINTS: PR00085
Pfam domain/function: PF00763 THF_DHG_CYH; PF02882 THF_DHG_CYH_C
EC number: =1.5.1.5; =3.5.4.9
Molecular weight: Translated: 30471; Mature: 30339
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: PS00766 THF_DHG_CYH_1; PS00767 THF_DHG_CYH_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAKIIDGKTIARQVRSEVAARVRQRLADGKRAPGLAVIMVGDDPASRIYVGSKQRACEE CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEECCHHHHHHH VGFLSRSYALPDSTDEAQLLALIDTLNADAAIDGILVQLPLPAGIDNSRVLERIHPDKDV HHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCHHHHHHHHCCCCCC DGFHPYNLGRLCQRTPKLRPCTPRGIITLLERCGIETQGMDAVMVGASNIVGRPMALELL CCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCHHHCCCHHHHHHH LAGCTTTITHSRTRNLQQHVERADLIVAAVGKPGFIPGEWVKPGAVVIDVGINRLESGKV HHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCE VGDVDFTGAAQRASWITPVPGGVGPMTVATLMQNTLQACEAFHDD EECCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AAKIIDGKTIARQVRSEVAARVRQRLADGKRAPGLAVIMVGDDPASRIYVGSKQRACEE CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEECCHHHHHHH VGFLSRSYALPDSTDEAQLLALIDTLNADAAIDGILVQLPLPAGIDNSRVLERIHPDKDV HHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCHHHHHHHHCCCCCC DGFHPYNLGRLCQRTPKLRPCTPRGIITLLERCGIETQGMDAVMVGASNIVGRPMALELL CCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCHHHCCCHHHHHHH LAGCTTTITHSRTRNLQQHVERADLIVAAVGKPGFIPGEWVKPGAVVIDVGINRLESGKV HHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCE VGDVDFTGAAQRASWITPVPGGVGPMTVATLMQNTLQACEAFHDD EECCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA