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The map label for this gene is 238917504

Identifier: 238917504

GI number: 238917504

Start: 1635468

End: 1636022

Strand: Reverse

Name: 238917504

Synonym: EUBELI_01583

Alternate gene names: NA

Gene position: 1636022-1635468 (Counterclockwise)

Preceding gene: 238917505

Following gene: 238917503

Centisome position: 76.3

GC content: 36.94

Gene sequence:

>555_bases
ATGGATGATAATCAGATAATTAATTTATTTTTTCAAAGGAATGAAGATGCAATTAATGCAGTTGATGAAAAATATGGTTC
TAAGTTAAATGCACTGGCAGCCAATATATTGCAATCAAGAGAGGATGGGCTGGAATGTGTCAATGACATGTATATGAAGG
CATGGAACAGCATACCGCCTGCAAGACCAGAGTATTTATTCGCATTTCTTGCAACATCTGCAAGAAATATTGCGATTGAT
ATGATAAGGAAAAACAATGCTGGTAAGAGGCAGGCAAAAGTGGTTGAGCTGACAAAAGAGCTGGAAGAATGCATAGGTGA
TGGCGGATTGCAGACACATCTGGACAAGGAAGATATTGGAGAGATGTTATCGCATTTTCTTGAAACAGTTGATAAAAATA
AAAGAATTATATTTCTCAGGCGGTACTGGTACTCGGACTCAATTAAAGATATTTCAGAAAGGATGCAGATGAGCGAATCA
GCAGTGAAAGTTACTCTTCACAGAACGAGAAAAGAATTAAGAAAATATCTGGAAAGCGAGGGTTTATATCTATGA

Upstream 100 bases:

>100_bases
CCAGAATTTTTTTATGGGATAAATGTAACCGTTGCAGGAATAATCCGTCTCTAATTATGAAAGGGTTAACGCTTTTAAAA
AACAGGGAGTACAGACAGTA

Downstream 100 bases:

>100_bases
AAAAATCAGAGGCAATGGATTTATATGAAGGACTTAATGAAATTAGTCCGCAAATGATTGAAGAAGCGGGAAATTACAAG
AAAACTGCCAGTGTGAATAT

Product: ECF subfamily RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-70 Factor ECF Subfamily; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MDDNQIINLFFQRNEDAINAVDEKYGSKLNALAANILQSREDGLECVNDMYMKAWNSIPPARPEYLFAFLATSARNIAID
MIRKNNAGKRQAKVVELTKELEECIGDGGLQTHLDKEDIGEMLSHFLETVDKNKRIIFLRRYWYSDSIKDISERMQMSES
AVKVTLHRTRKELRKYLESEGLYL

Sequences:

>Translated_184_residues
MDDNQIINLFFQRNEDAINAVDEKYGSKLNALAANILQSREDGLECVNDMYMKAWNSIPPARPEYLFAFLATSARNIAID
MIRKNNAGKRQAKVVELTKELEECIGDGGLQTHLDKEDIGEMLSHFLETVDKNKRIIFLRRYWYSDSIKDISERMQMSES
AVKVTLHRTRKELRKYLESEGLYL
>Mature_184_residues
MDDNQIINLFFQRNEDAINAVDEKYGSKLNALAANILQSREDGLECVNDMYMKAWNSIPPARPEYLFAFLATSARNIAID
MIRKNNAGKRQAKVVELTKELEECIGDGGLQTHLDKEDIGEMLSHFLETVDKNKRIIFLRRYWYSDSIKDISERMQMSES
AVKVTLHRTRKELRKYLESEGLYL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21342; Mature: 21342

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDNQIINLFFQRNEDAINAVDEKYGSKLNALAANILQSREDGLECVNDMYMKAWNSIPP
CCCCHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ARPEYLFAFLATSARNIAIDMIRKNNAGKRQAKVVELTKELEECIGDGGLQTHLDKEDIG
CCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
EMLSHFLETVDKNKRIIFLRRYWYSDSIKDISERMQMSESAVKVTLHRTRKELRKYLESE
HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLYL
CCCC
>Mature Secondary Structure
MDDNQIINLFFQRNEDAINAVDEKYGSKLNALAANILQSREDGLECVNDMYMKAWNSIPP
CCCCHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ARPEYLFAFLATSARNIAIDMIRKNNAGKRQAKVVELTKELEECIGDGGLQTHLDKEDIG
CCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
EMLSHFLETVDKNKRIIFLRRYWYSDSIKDISERMQMSESAVKVTLHRTRKELRKYLESE
HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLYL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA