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The map label for this gene is yagH [C]

Identifier: 238917488

GI number: 238917488

Start: 1618573

End: 1620201

Strand: Reverse

Name: yagH [C]

Synonym: EUBELI_01566

Alternate gene names: 238917488

Gene position: 1620201-1618573 (Counterclockwise)

Preceding gene: 238917489

Following gene: 238917485

Centisome position: 75.56

GC content: 42.66

Gene sequence:

>1629_bases
ATGTGGACAGCAGATTTAGGGAATGGACGATACAAGAATCCAATACTTTACGCTGATTATTCAGATCCGGACGCAATCCG
TGTCGGTGATGATTATTTTATGATATCATCAAGCTTTTCTAATGCTCCGGCTATGCCGTTGCTTCATTCTAAGGACCTTG
TAAACTGGAAGGTTGTTAACTACATTTTGGCTGAAATTCCAGAATTCAGATATAGAAATCCAATTCATGGATGCGGAGTG
TGGGCACCTGCAATAAGATATCATGAGGGTACATATTATGTGTGCTTCCCAATGCCGGATGAAGGAATATATATGACTAC
AGCAACAGACCCTTATGGTGAGTGGAGTAAGCCAGTGAATATAAGACCAGGCGCAGGCTGGATTGACCCATGCCCATTCT
GGGATGAGGATGGAAAGGCATATCTTGTTGCAGGAGTTGCCAAGAGCCGTATCGGATACAAGAGTGTGCTTCATATGGTA
GAGATGCAGCCAGATGGAATGGGGCTTATTGGTGAGGAAAAGATTATATTTGACGGTAACTTAAATGACCAGATTACAAT
AGAAGGTCCTAAGATGTATAAGCGAAACGGATGGTATTATATATTTGCACCGGCTGGCGGTGTTAAGACAGGCTGGCAGA
CAGTGTTAAGGTCGAAAAATGTGTTTGGACCATATGAGTATAAAGTGGTTATGAGACAAGGAGATTCGCCTGTAAATGGA
CCTCATCAGGGTGCATGGGTTGACACAGTTACAGGACAGGACTGGTTCATACATTTTCAGGATGTGTATGCAGCAGGCAG
AATAACACATCTGCAGCCAATGAGCTGGGAAAATGACTGGCCTGTTATTGGAGTTAAGAAAGATGGCAATGATTATGGCG
AGCCTGTGATGGAGTACGAAAAACCTGATGTTGGTGCCGTTTATGAAATATGTGAGCCAGATACTACAGATGAATTCACA
GAAGATACTTTGGGACTGCAGTGGCAGTGGAACGCCAATCCTGATAGTGACTGGGCGCAGTCTGGCACTGATGAAAGTGG
AAATGTGTCTGATGACGGTTCTTATATAAAGCTTAATGCGGTTGGCAGAGCATCAAACAGACCAATTGGCGATTACAGAA
ATCTTCTCCTGCAGAAGTGGCCGGCACCGGAATTTAGCTGTATTACTAAGATGAATATAAGCGGAATGGCTGATGGTGAT
AATGCCGGATTCATTCATATGGGAATGAATTATCTGGCAGCAGATGTGACTGTCAAAGGCGGTAAGATGGAAGTGTATGC
AGTAAAGGGTGTGCAGCAGTTTGACTGTGACCAGGCTTATACTAAAGAGACTAAAGAATTGCTTGCTTCATACGATAATC
TTAAGGAAATATATTTCAGATACACAGTTAAAAAGACAGGAACTAAAGATCATGTCGAGGGTGGACTTCCTGTTAAGGAA
GCACCTGTTGAGACAGTAACAATAGAGATAAGCACAGACGGAAAAAAATACACCAACCCTGTTTCCGTTATTGCCAAAGC
CGGAAGATGGGTTGGTGTAAAGAGCGGTGTATATGTATCACATGATAATTCTGCCAATAGTGAAAACAAAGGTTTTGTTA
CGGTAGATTATGTAAGATACAGCCGTTAA

Upstream 100 bases:

>100_bases
CTGGAAATTCTTATTTAACTGTTGTAATATGATAGCAGAGAAATATCTGCATAAGCAGAAATAAATTATTGAGCCGTAAA
CTGGCAGAAAGAGGTCATAT

Downstream 100 bases:

>100_bases
ATATTCTTAATGTTTTTCTTAGCCCACAATTCAAGGGCTTTCGCATTATTGGAAATAAGGTCGAGGGATTCAAGTATCTG
CTTGAATTCCTCCTGTTCTC

Product: glycoside hydrolase family 43 protein

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 542; Mature: 542

Protein sequence:

>542_residues
MWTADLGNGRYKNPILYADYSDPDAIRVGDDYFMISSSFSNAPAMPLLHSKDLVNWKVVNYILAEIPEFRYRNPIHGCGV
WAPAIRYHEGTYYVCFPMPDEGIYMTTATDPYGEWSKPVNIRPGAGWIDPCPFWDEDGKAYLVAGVAKSRIGYKSVLHMV
EMQPDGMGLIGEEKIIFDGNLNDQITIEGPKMYKRNGWYYIFAPAGGVKTGWQTVLRSKNVFGPYEYKVVMRQGDSPVNG
PHQGAWVDTVTGQDWFIHFQDVYAAGRITHLQPMSWENDWPVIGVKKDGNDYGEPVMEYEKPDVGAVYEICEPDTTDEFT
EDTLGLQWQWNANPDSDWAQSGTDESGNVSDDGSYIKLNAVGRASNRPIGDYRNLLLQKWPAPEFSCITKMNISGMADGD
NAGFIHMGMNYLAADVTVKGGKMEVYAVKGVQQFDCDQAYTKETKELLASYDNLKEIYFRYTVKKTGTKDHVEGGLPVKE
APVETVTIEISTDGKKYTNPVSVIAKAGRWVGVKSGVYVSHDNSANSENKGFVTVDYVRYSR

Sequences:

>Translated_542_residues
MWTADLGNGRYKNPILYADYSDPDAIRVGDDYFMISSSFSNAPAMPLLHSKDLVNWKVVNYILAEIPEFRYRNPIHGCGV
WAPAIRYHEGTYYVCFPMPDEGIYMTTATDPYGEWSKPVNIRPGAGWIDPCPFWDEDGKAYLVAGVAKSRIGYKSVLHMV
EMQPDGMGLIGEEKIIFDGNLNDQITIEGPKMYKRNGWYYIFAPAGGVKTGWQTVLRSKNVFGPYEYKVVMRQGDSPVNG
PHQGAWVDTVTGQDWFIHFQDVYAAGRITHLQPMSWENDWPVIGVKKDGNDYGEPVMEYEKPDVGAVYEICEPDTTDEFT
EDTLGLQWQWNANPDSDWAQSGTDESGNVSDDGSYIKLNAVGRASNRPIGDYRNLLLQKWPAPEFSCITKMNISGMADGD
NAGFIHMGMNYLAADVTVKGGKMEVYAVKGVQQFDCDQAYTKETKELLASYDNLKEIYFRYTVKKTGTKDHVEGGLPVKE
APVETVTIEISTDGKKYTNPVSVIAKAGRWVGVKSGVYVSHDNSANSENKGFVTVDYVRYSR
>Mature_542_residues
MWTADLGNGRYKNPILYADYSDPDAIRVGDDYFMISSSFSNAPAMPLLHSKDLVNWKVVNYILAEIPEFRYRNPIHGCGV
WAPAIRYHEGTYYVCFPMPDEGIYMTTATDPYGEWSKPVNIRPGAGWIDPCPFWDEDGKAYLVAGVAKSRIGYKSVLHMV
EMQPDGMGLIGEEKIIFDGNLNDQITIEGPKMYKRNGWYYIFAPAGGVKTGWQTVLRSKNVFGPYEYKVVMRQGDSPVNG
PHQGAWVDTVTGQDWFIHFQDVYAAGRITHLQPMSWENDWPVIGVKKDGNDYGEPVMEYEKPDVGAVYEICEPDTTDEFT
EDTLGLQWQWNANPDSDWAQSGTDESGNVSDDGSYIKLNAVGRASNRPIGDYRNLLLQKWPAPEFSCITKMNISGMADGD
NAGFIHMGMNYLAADVTVKGGKMEVYAVKGVQQFDCDQAYTKETKELLASYDNLKEIYFRYTVKKTGTKDHVEGGLPVKE
APVETVTIEISTDGKKYTNPVSVIAKAGRWVGVKSGVYVSHDNSANSENKGFVTVDYVRYSR

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=427, Percent_Identity=24.824355971897, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 60747; Mature: 60747

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWTADLGNGRYKNPILYADYSDPDAIRVGDDYFMISSSFSNAPAMPLLHSKDLVNWKVVN
CCCCCCCCCCCCCCEEEEECCCCCEEEECCCEEEEECCCCCCCCCCEECCCCCCCHHHHH
YILAEIPEFRYRNPIHGCGVWAPAIRYHEGTYYVCFPMPDEGIYMTTATDPYGEWSKPVN
HHHHHCCCHHCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCEE
IRPGAGWIDPCPFWDEDGKAYLVAGVAKSRIGYKSVLHMVEMQPDGMGLIGEEKIIFDGN
ECCCCCCCCCCCCCCCCCCEEEEEECHHHCCCHHHHHHHHEECCCCCCEECCCEEEECCC
LNDQITIEGPKMYKRNGWYYIFAPAGGVKTGWQTVLRSKNVFGPYEYKVVMRQGDSPVNG
CCCEEEEECCCEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC
PHQGAWVDTVTGQDWFIHFQDVYAAGRITHLQPMSWENDWPVIGVKKDGNDYGEPVMEYE
CCCCCEEEEECCCEEEEEEEEHHCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCHHCC
KPDVGAVYEICEPDTTDEFTEDTLGLQWQWNANPDSDWAQSGTDESGNVSDDGSYIKLNA
CCCCCEEEEECCCCCCCCHHHHHCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCEEEEEE
VGRASNRPIGDYRNLLLQKWPAPEFSCITKMNISGMADGDNAGFIHMGMNYLAADVTVKG
ECCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCEEEEEEEEEC
GKMEVYAVKGVQQFDCDQAYTKETKELLASYDNLKEIYFRYTVKKTGTKDHVEGGLPVKE
CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCHHHCCCCCCCCC
APVETVTIEISTDGKKYTNPVSVIAKAGRWVGVKSGVYVSHDNSANSENKGFVTVDYVRY
CCCEEEEEEEECCCCCCCCHHHHHHHCCCEEEECCCEEEECCCCCCCCCCCEEEEEEEEE
SR
CC
>Mature Secondary Structure
MWTADLGNGRYKNPILYADYSDPDAIRVGDDYFMISSSFSNAPAMPLLHSKDLVNWKVVN
CCCCCCCCCCCCCCEEEEECCCCCEEEECCCEEEEECCCCCCCCCCEECCCCCCCHHHHH
YILAEIPEFRYRNPIHGCGVWAPAIRYHEGTYYVCFPMPDEGIYMTTATDPYGEWSKPVN
HHHHHCCCHHCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCEE
IRPGAGWIDPCPFWDEDGKAYLVAGVAKSRIGYKSVLHMVEMQPDGMGLIGEEKIIFDGN
ECCCCCCCCCCCCCCCCCCEEEEEECHHHCCCHHHHHHHHEECCCCCCEECCCEEEECCC
LNDQITIEGPKMYKRNGWYYIFAPAGGVKTGWQTVLRSKNVFGPYEYKVVMRQGDSPVNG
CCCEEEEECCCEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC
PHQGAWVDTVTGQDWFIHFQDVYAAGRITHLQPMSWENDWPVIGVKKDGNDYGEPVMEYE
CCCCCEEEEECCCEEEEEEEEHHCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCHHCC
KPDVGAVYEICEPDTTDEFTEDTLGLQWQWNANPDSDWAQSGTDESGNVSDDGSYIKLNA
CCCCCEEEEECCCCCCCCHHHHHCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCEEEEEE
VGRASNRPIGDYRNLLLQKWPAPEFSCITKMNISGMADGDNAGFIHMGMNYLAADVTVKG
ECCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCEEEEEEEEEC
GKMEVYAVKGVQQFDCDQAYTKETKELLASYDNLKEIYFRYTVKKTGTKDHVEGGLPVKE
CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCHHHCCCCCCCCC
APVETVTIEISTDGKKYTNPVSVIAKAGRWVGVKSGVYVSHDNSANSENKGFVTVDYVRY
CCCEEEEEEEECCCCCCCCHHHHHHHCCCEEEECCCEEEECCCCCCCCCCCEEEEEEEEE
SR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA