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The map label for this gene is ytlD [H]

Identifier: 238917245

GI number: 238917245

Start: 1356055

End: 1356846

Strand: Direct

Name: ytlD [H]

Synonym: EUBELI_01319

Alternate gene names: 238917245

Gene position: 1356055-1356846 (Clockwise)

Preceding gene: 238917244

Following gene: 238917246

Centisome position: 63.24

GC content: 34.85

Gene sequence:

>792_bases
ATGAATGTGAGCCCATTACAGCGAAGATTTATAATTAAGCAGCGTATATATTCCATATCAGTGGTTCTCTCCCGCCTTAT
ACTGTTTTTAGGGTTCATTGGCATATGGGAATTTACTGCTGACAAAGGTATTATCAATGCATTTATATTCAGTTCACCCG
TAAGACTATACCAGACATTTATAGATCTTTCCAGAGATGGTGTGATATTCATGCATATATGGGTAACACTTTATGAAACA
CTTGTTGCATTTGCAATTATTACCATTGTGGGAATAATATTTGCAATTCTTCTATGGTGTTTTAAAGGTCTTTCAGATTG
TCTTGAACCTTTCATGGTTGTTCTTAACAGCCTCCCTAAATCAGCACTGGCTCCAATGCTTATTGTGTGGCTCGGAACTA
ATACAAAAGCGATAATTATAACAGCCGTGTCTGTCGCAATATTTGGTATGATTATTAATCTTTACACAGGATTCTTAGAA
ATCGACAAGGAAAAAATAACTCTTATACGCACCCTTGGCGGCAAAAAATGGCATATCTTATGCAAGCTTATTCTTCCCGG
TTCTAAAAAAATTATTATAAGTAACATGAAAGTAAATATTGGTTTGTGCCTTGTAGGCGTAATCATAGGAGAATTCTTAG
CTGCTAAAAAAGGGCTTGGCTATCTTATAATATATGGCAGCCAGGTATTTAAGATGAGCTATGTTGTACTTGGAATTGTT
ATTCTCTGCATTATATCAACGCTTCTTTTTGCACTTATAAATATAATTCAAAAGCTGTTTCTAAAAGACTGA

Upstream 100 bases:

>100_bases
TGACTAACAGACCTGCAAAGCTTTTAAAAACAGTTGATATTGAAGCAAGAGATACTCTTTCAAATCAGAAATATTTTGAT
GAAATAAGGGAGGTGTTAAA

Downstream 100 bases:

>100_bases
TTATATATTATAATTAAGATACTATAAGCAAAACAAGGAGGCAGACAAGGAGGATTTATGCTTTCTCTTACTATTAAAGA
TTTAAAGCAATTTATGAATA

Product: sulfonate/nitrate/taurine transport system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MNVSPLQRRFIIKQRIYSISVVLSRLILFLGFIGIWEFTADKGIINAFIFSSPVRLYQTFIDLSRDGVIFMHIWVTLYET
LVAFAIITIVGIIFAILLWCFKGLSDCLEPFMVVLNSLPKSALAPMLIVWLGTNTKAIIITAVSVAIFGMIINLYTGFLE
IDKEKITLIRTLGGKKWHILCKLILPGSKKIIISNMKVNIGLCLVGVIIGEFLAAKKGLGYLIIYGSQVFKMSYVVLGIV
ILCIISTLLFALINIIQKLFLKD

Sequences:

>Translated_263_residues
MNVSPLQRRFIIKQRIYSISVVLSRLILFLGFIGIWEFTADKGIINAFIFSSPVRLYQTFIDLSRDGVIFMHIWVTLYET
LVAFAIITIVGIIFAILLWCFKGLSDCLEPFMVVLNSLPKSALAPMLIVWLGTNTKAIIITAVSVAIFGMIINLYTGFLE
IDKEKITLIRTLGGKKWHILCKLILPGSKKIIISNMKVNIGLCLVGVIIGEFLAAKKGLGYLIIYGSQVFKMSYVVLGIV
ILCIISTLLFALINIIQKLFLKD
>Mature_263_residues
MNVSPLQRRFIIKQRIYSISVVLSRLILFLGFIGIWEFTADKGIINAFIFSSPVRLYQTFIDLSRDGVIFMHIWVTLYET
LVAFAIITIVGIIFAILLWCFKGLSDCLEPFMVVLNSLPKSALAPMLIVWLGTNTKAIIITAVSVAIFGMIINLYTGFLE
IDKEKITLIRTLGGKKWHILCKLILPGSKKIIISNMKVNIGLCLVGVIIGEFLAAKKGLGYLIIYGSQVFKMSYVVLGIV
ILCIISTLLFALINIIQKLFLKD

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0600

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87081802, Length=235, Percent_Identity=23.8297872340426, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1786564, Length=195, Percent_Identity=20, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29441; Mature: 29441

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVSPLQRRFIIKQRIYSISVVLSRLILFLGFIGIWEFTADKGIINAFIFSSPVRLYQTF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHH
IDLSRDGVIFMHIWVTLYETLVAFAIITIVGIIFAILLWCFKGLSDCLEPFMVVLNSLPK
HHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
SALAPMLIVWLGTNTKAIIITAVSVAIFGMIINLYTGFLEIDKEKITLIRTLGGKKWHIL
HHHHHEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEE
CKLILPGSKKIIISNMKVNIGLCLVGVIIGEFLAAKKGLGYLIIYGSQVFKMSYVVLGIV
EEEECCCCCEEEEECCEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
ILCIISTLLFALINIIQKLFLKD
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNVSPLQRRFIIKQRIYSISVVLSRLILFLGFIGIWEFTADKGIINAFIFSSPVRLYQTF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHH
IDLSRDGVIFMHIWVTLYETLVAFAIITIVGIIFAILLWCFKGLSDCLEPFMVVLNSLPK
HHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
SALAPMLIVWLGTNTKAIIITAVSVAIFGMIINLYTGFLEIDKEKITLIRTLGGKKWHIL
HHHHHEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEE
CKLILPGSKKIIISNMKVNIGLCLVGVIIGEFLAAKKGLGYLIIYGSQVFKMSYVVLGIV
EEEECCCCCEEEEECCEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
ILCIISTLLFALINIIQKLFLKD
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]