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The map label for this gene is xerC [H]

Identifier: 238916936

GI number: 238916936

Start: 1023174

End: 1024238

Strand: Reverse

Name: xerC [H]

Synonym: EUBELI_01005

Alternate gene names: 238916936

Gene position: 1024238-1023174 (Counterclockwise)

Preceding gene: 238916937

Following gene: 238916909

Centisome position: 47.77

GC content: 35.68

Gene sequence:

>1065_bases
ATGGAGGTATTCTTAATGGCTGAAAAAACCTACACCGAACAACAAAACATCAAGTACAAGAAAAAGCTTAATGACTTGCT
TGATATATTACCTGATTTCTGTACACAGTATTTTGACAGTCTGGAATTTAATAAGCAGCCAAGAACTAAGATTGCCTACG
CAATGGATATTAAAGGCTTCTTTGAATTTCTCATTGAATGCATACCTAAGTTCAGTTCATATGCTATGAAAGACTTTAAA
CCATCAGATTTAGAAAAGATAGATGGTACAGATATAACCAGATACTTACGACATGTAAAGTTATATAAAAAGAACGGCCG
TGATATAACTAACTCAGAAAGTGCTGCCAAGCGTAAATTATGTGCATTAAGACGTTTTTATGAATATTACTGCCGTTATG
AAATAATCAGTTTGAATCCGACTATAAAAGTTGATATGCCTAAAATTCATGAAAAAGCTATTATAAGAATGGAGCCTAAT
GAGGTAGCTGAATTTCTTGATAATGTGGAATCTGGCAATAAGCTTACCAAAACACAGCTCCAAAGCCATGAAAAGCTTAA
GACGCGTGATCTGGCTCTCCTTACACTTATGCTCGGAACTGGTATCCGTGTATCAGAATGTGTTGGATTAGATATTAATG
ATGTAGATTTTGATAATGACAGAATCAGAGTTATAAGAAAAGGTGGCTCTGAAAGCTTTGTATACTTTGGTGACGAAGTC
CGTGAAGCACTGCTTAATTATCTTGAAGAAAGAAAGAATTTAACACCTGATGAAGGACATGAGAATGCGCTATTCATATC
AGCCAAAAAGAAGCGCCTATGTGTGCGATCCGTTGAACTTCTTGTTAAGAAATATGCCCAGACTGTTACAACTGTAAAGC
ATATTACCCCTCATAAGCTTCGAAGTACTTATGGTACTAATCTGTATCAGGAAAGCCAGGATATATATCTTGTTGCTGAT
GTTTTAGGGCATAAGGATGTTAATACTACACGAAAGCATTATGCAGAGATTGTAGAAGAAAACAAGCGTTCGGCAAGAAA
CATTGTCAAGTTAAGAAAAGACTGA

Upstream 100 bases:

>100_bases
GAAAATTAGTTGCAAAATAAGAGATAGCAGAATATAATTATCCATGCAGTAATCACTTCGCTAAAGTCAGGTTTAACGAA
GTGATTAGTATTTTTTATAT

Downstream 100 bases:

>100_bases
CAACATATAAAAGGCGATACTCTTCCACTATTATGTGTCAGAATATCGCCTTTTATTTAATATTAATATTCTACTGATAA
ATTTCACGCCATTCCATATC

Product: integrase/recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MEVFLMAEKTYTEQQNIKYKKKLNDLLDILPDFCTQYFDSLEFNKQPRTKIAYAMDIKGFFEFLIECIPKFSSYAMKDFK
PSDLEKIDGTDITRYLRHVKLYKKNGRDITNSESAAKRKLCALRRFYEYYCRYEIISLNPTIKVDMPKIHEKAIIRMEPN
EVAEFLDNVESGNKLTKTQLQSHEKLKTRDLALLTLMLGTGIRVSECVGLDINDVDFDNDRIRVIRKGGSESFVYFGDEV
REALLNYLEERKNLTPDEGHENALFISAKKKRLCVRSVELLVKKYAQTVTTVKHITPHKLRSTYGTNLYQESQDIYLVAD
VLGHKDVNTTRKHYAEIVEENKRSARNIVKLRKD

Sequences:

>Translated_354_residues
MEVFLMAEKTYTEQQNIKYKKKLNDLLDILPDFCTQYFDSLEFNKQPRTKIAYAMDIKGFFEFLIECIPKFSSYAMKDFK
PSDLEKIDGTDITRYLRHVKLYKKNGRDITNSESAAKRKLCALRRFYEYYCRYEIISLNPTIKVDMPKIHEKAIIRMEPN
EVAEFLDNVESGNKLTKTQLQSHEKLKTRDLALLTLMLGTGIRVSECVGLDINDVDFDNDRIRVIRKGGSESFVYFGDEV
REALLNYLEERKNLTPDEGHENALFISAKKKRLCVRSVELLVKKYAQTVTTVKHITPHKLRSTYGTNLYQESQDIYLVAD
VLGHKDVNTTRKHYAEIVEENKRSARNIVKLRKD
>Mature_354_residues
MEVFLMAEKTYTEQQNIKYKKKLNDLLDILPDFCTQYFDSLEFNKQPRTKIAYAMDIKGFFEFLIECIPKFSSYAMKDFK
PSDLEKIDGTDITRYLRHVKLYKKNGRDITNSESAAKRKLCALRRFYEYYCRYEIISLNPTIKVDMPKIHEKAIIRMEPN
EVAEFLDNVESGNKLTKTQLQSHEKLKTRDLALLTLMLGTGIRVSECVGLDINDVDFDNDRIRVIRKGGSESFVYFGDEV
REALLNYLEERKNLTPDEGHENALFISAKKKRLCVRSVELLVKKYAQTVTTVKHITPHKLRSTYGTNLYQESQDIYLVAD
VLGHKDVNTTRKHYAEIVEENKRSARNIVKLRKD

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=213, Percent_Identity=30.0469483568075, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789261, Length=311, Percent_Identity=26.6881028938907, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790768, Length=149, Percent_Identity=29.5302013422819, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 41374; Mature: 41374

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVFLMAEKTYTEQQNIKYKKKLNDLLDILPDFCTQYFDSLEFNKQPRTKIAYAMDIKGF
CEEEEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHH
FEFLIECIPKFSSYAMKDFKPSDLEKIDGTDITRYLRHVKLYKKNGRDITNSESAAKRKL
HHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
CALRRFYEYYCRYEIISLNPTIKVDMPKIHEKAIIRMEPNEVAEFLDNVESGNKLTKTQL
HHHHHHHHHHHCEEEEEECCEEEECCCHHCCCEEEEECHHHHHHHHHHHHCCCCHHHHHH
QSHEKLKTRDLALLTLMLGTGIRVSECVGLDINDVDFDNDRIRVIRKGGSESFVYFGDEV
HHHHHHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCCCCCEEEEEEECCCCCEEEECHHH
REALLNYLEERKNLTPDEGHENALFISAKKKRLCVRSVELLVKKYAQTVTTVKHITPHKL
HHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
RSTYGTNLYQESQDIYLVADVLGHKDVNTTRKHYAEIVEENKRSARNIVKLRKD
HHHHCCCHHCCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEVFLMAEKTYTEQQNIKYKKKLNDLLDILPDFCTQYFDSLEFNKQPRTKIAYAMDIKGF
CEEEEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHH
FEFLIECIPKFSSYAMKDFKPSDLEKIDGTDITRYLRHVKLYKKNGRDITNSESAAKRKL
HHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
CALRRFYEYYCRYEIISLNPTIKVDMPKIHEKAIIRMEPNEVAEFLDNVESGNKLTKTQL
HHHHHHHHHHHCEEEEEECCEEEECCCHHCCCEEEEECHHHHHHHHHHHHCCCCHHHHHH
QSHEKLKTRDLALLTLMLGTGIRVSECVGLDINDVDFDNDRIRVIRKGGSESFVYFGDEV
HHHHHHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCCCCCEEEEEEECCCCCEEEECHHH
REALLNYLEERKNLTPDEGHENALFISAKKKRLCVRSVELLVKKYAQTVTTVKHITPHKL
HHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
RSTYGTNLYQESQDIYLVADVLGHKDVNTTRKHYAEIVEENKRSARNIVKLRKD
HHHHCCCHHCCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA