Click here to switch to the map view.

The map label for this gene is rimP [H]

Identifier: 238896677

GI number: 238896677

Start: 4657575

End: 4658039

Strand: Reverse

Name: rimP [H]

Synonym: KP1_4889

Alternate gene names: 238896677

Gene position: 4658039-4657575 (Counterclockwise)

Preceding gene: 238896681

Following gene: 238896676

Centisome position: 88.75

GC content: 52.26

Gene sequence:

>465_bases
TTGGGGGTGGGTTTGTCCACATTAGAGCAAAAATTGACAGAGATGCTCACTGCGCCGGTTGAAGCGCTTGGCTTTGAGCT
GGTCGGCATCGAATTTATTCGCGGTCGCACATCCACACTGCGCATCTATATTGATAGTGAAGATGGCATCAACGTTGATG
ATTGTGCTGATGTGAGCCACCAGGTAAGCGCCGTCATGGATGTCGAAGACCCGATCACTGTCGCTTACAACCTGGAAGTC
TCTTCGCTTGGTCTTGACCGTCCGATGTTCACCGCCGAACACTATCAACGTTTCACCGGCGAAGAAGTTGCGCTGGTGCT
GCGCATGGCGGTTCAGAACCGCCGCAAATGGCAGGGCATTATCAAAGCGGTAGACGGTGAGATGATCACGGTAACCGTCG
AAGGCAAAGATGAAGTGTTCGCGCTGAGTAACATCCAGAAGGCGAACCTGGTTCCCCACTTTTAA

Upstream 100 bases:

>100_bases
CATGGCGATCTCAGGGTTCAGTTATCTAAAGCCCCGATTTATCGGGGTTTTTTGTTATCTGACTTCAGAATAACTGGGCT
ATACGCCCTTTTTTTATGTC

Downstream 100 bases:

>100_bases
CAGTCTGGATTGAGGTGAAAGGCCCCGATGAACAAAGAAATTTTGGCTGTTGTTGAAGCCGTTTCCAACGAAAAAGCGCT
GCCGCGTGAGAAAATTTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MGVGLSTLEQKLTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVMDVEDPITVAYNLEV
SSLGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF

Sequences:

>Translated_154_residues
MGVGLSTLEQKLTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVMDVEDPITVAYNLEV
SSLGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF
>Mature_153_residues
GVGLSTLEQKLTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVMDVEDPITVAYNLEVS
SLGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF

Specific function: Required for maturation of 30S ribosomal subunits [H]

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family [H]

Homologues:

Organism=Escherichia coli, GI226510978, Length=150, Percent_Identity=94, Blast_Score=294, Evalue=1e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003728 [H]

Pfam domain/function: PF02576 DUF150 [H]

EC number: NA

Molecular weight: Translated: 17073; Mature: 16942

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVGLSTLEQKLTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSH
CCCCHHHHHHHHHHHHHCCHHHHCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHCHHH
QVSAVMDVEDPITVAYNLEVSSLGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGI
HHHHEEECCCCEEEEEEEEEHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHH
IKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF
HHHCCCCEEEEEECCCCCEEEECCCCCCCCCCCC
>Mature Secondary Structure 
GVGLSTLEQKLTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSH
CCCHHHHHHHHHHHHHCCHHHHCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHCHHH
QVSAVMDVEDPITVAYNLEVSSLGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGI
HHHHEEECCCCEEEEEEEEEHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHH
IKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF
HHHCCCCEEEEEECCCCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA