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The map label for this gene is yraR [H]

Identifier: 238896659

GI number: 238896659

Start: 4638271

End: 4638939

Strand: Reverse

Name: yraR [H]

Synonym: KP1_4866

Alternate gene names: 238896659

Gene position: 4638939-4638271 (Counterclockwise)

Preceding gene: 238896661

Following gene: 238896658

Centisome position: 88.39

GC content: 61.14

Gene sequence:

>669_bases
ATGAGCCCGAAAGTGCAAGGCGGAGAATTCTGTAAAGGAGAACCAATGAGTCAGGTATTATTAACCGGCGCGACCGGGTT
AGTTGGCGGTCACTTACTCCGGCTGCTGCAGAATGAGCCCCGTATAAGCACCATCGCCGCGCCGACGCGTCGCCCGCTGG
CGCCAGCGGAAGGTGTCTTTAATCCTCACGATCCCCAGCTGACCGATGCCCTGGCGCAGGTGGTTGACCCGGTGGATATC
GTCTTCTGTTGCCTGGGAACGACGCGCCGGGAGGCCGGGAGCAAAGAGGCCTTCGTCCATGCTGACTACACGCTGGTGGT
TGATACCGCGCTGACCGGCAAACGACTGGGTGCGCAACATATGCTGGTGGTTAGCGCGATGGGCGCCAACGCCCACTCGC
CGTTTTTCTACAATCGGGTGAAGGGGGAAATGGAGGCGGCGCTGATTGAGCAAGACTGGCCGCGGCTGACCATCGCCAGG
CCGTCGATGCTGTCAGGCGAGCGGGAAAAAAAGCGGGCCAATGAGACCTTCCTCGCACCATTGTTCCGGCTCTTGCCGGG
GAACTGGAAATCCATTGCGGCCCGCGATGTGGCGATCGCCCTGCTGGCGGAGGCGCTGTCGCCCACCCACGAAGGGGTGC
GAATTCTGTCATCATCGGAACTACGGTAG

Upstream 100 bases:

>100_bases
GCTATCTTTTTACTCATGCTTCCTCCACTGTCTGGATGGTCAATGAGGTAATTCCATGATGATGGTGGATACTTACCTTG
TAAGGTATTAAGCCTGGAAC

Downstream 100 bases:

>100_bases
CGCGCCGCGCGGCAGGCTGAATAGCGGTTTGCAAACGCAGGCTTCCGGCGTAGTATTCACGGCTTCAATTCATATCCACA
TTTCTTGCTGGGGAATGCTA

Product: putative NADH dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MSPKVQGGEFCKGEPMSQVLLTGATGLVGGHLLRLLQNEPRISTIAAPTRRPLAPAEGVFNPHDPQLTDALAQVVDPVDI
VFCCLGTTRREAGSKEAFVHADYTLVVDTALTGKRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEAALIEQDWPRLTIAR
PSMLSGEREKKRANETFLAPLFRLLPGNWKSIAARDVAIALLAEALSPTHEGVRILSSSELR

Sequences:

>Translated_222_residues
MSPKVQGGEFCKGEPMSQVLLTGATGLVGGHLLRLLQNEPRISTIAAPTRRPLAPAEGVFNPHDPQLTDALAQVVDPVDI
VFCCLGTTRREAGSKEAFVHADYTLVVDTALTGKRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEAALIEQDWPRLTIAR
PSMLSGEREKKRANETFLAPLFRLLPGNWKSIAARDVAIALLAEALSPTHEGVRILSSSELR
>Mature_221_residues
SPKVQGGEFCKGEPMSQVLLTGATGLVGGHLLRLLQNEPRISTIAAPTRRPLAPAEGVFNPHDPQLTDALAQVVDPVDIV
FCCLGTTRREAGSKEAFVHADYTLVVDTALTGKRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEAALIEQDWPRLTIARP
SMLSGEREKKRANETFLAPLFRLLPGNWKSIAARDVAIALLAEALSPTHEGVRILSSSELR

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=208, Percent_Identity=30.7692307692308, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI148728168, Length=208, Percent_Identity=30.7692307692308, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI148728164, Length=208, Percent_Identity=30.7692307692308, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI148728166, Length=211, Percent_Identity=30.3317535545024, Blast_Score=99, Evalue=4e-21,
Organism=Escherichia coli, GI87082218, Length=207, Percent_Identity=82.6086956521739, Blast_Score=361, Evalue=1e-101,
Organism=Caenorhabditis elegans, GI71983631, Length=212, Percent_Identity=31.1320754716981, Blast_Score=100, Evalue=6e-22,
Organism=Saccharomyces cerevisiae, GI6320840, Length=158, Percent_Identity=32.9113924050633, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 24045; Mature: 23914

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPKVQGGEFCKGEPMSQVLLTGATGLVGGHLLRLLQNEPRISTIAAPTRRPLAPAEGVF
CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC
NPHDPQLTDALAQVVDPVDIVFCCLGTTRREAGSKEAFVHADYTLVVDTALTGKRLGAQH
CCCCCHHHHHHHHHHCHHHHHHHHCCCHHHHCCCCCEEEECCEEEEEECCCCCCCCCCHH
MLVVSAMGANAHSPFFYNRVKGEMEAALIEQDWPRLTIARPSMLSGEREKKRANETFLAP
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCHHHHHHCHHHHHH
LFRLLPGNWKSIAARDVAIALLAEALSPTHEGVRILSSSELR
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCC
>Mature Secondary Structure 
SPKVQGGEFCKGEPMSQVLLTGATGLVGGHLLRLLQNEPRISTIAAPTRRPLAPAEGVF
CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC
NPHDPQLTDALAQVVDPVDIVFCCLGTTRREAGSKEAFVHADYTLVVDTALTGKRLGAQH
CCCCCHHHHHHHHHHCHHHHHHHHCCCHHHHCCCCCEEEECCEEEEEECCCCCCCCCCHH
MLVVSAMGANAHSPFFYNRVKGEMEAALIEQDWPRLTIARPSMLSGEREKKRANETFLAP
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCHHHHHHCHHHHHH
LFRLLPGNWKSIAARDVAIALLAEALSPTHEGVRILSSSELR
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]