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The map label for this gene is yhaJ [H]

Identifier: 238896629

GI number: 238896629

Start: 4609338

End: 4610234

Strand: Reverse

Name: yhaJ [H]

Synonym: KP1_4831

Alternate gene names: 238896629

Gene position: 4610234-4609338 (Counterclockwise)

Preceding gene: 238896632

Following gene: 238896617

Centisome position: 87.84

GC content: 59.09

Gene sequence:

>897_bases
ATGGCCAAAGAGAGAGCATTAACGCTGGAAGCGTTACGCGTGATGGATGCGATCGACCGGCGCGGAAGCTTCGCTGCCGC
AGCTGATGAGCTGGGACGCGTGCCTTCCGCCCTGAGCTACACCATGCAAAAACTGGAGGAGGAACTGGACGTGGTGCTGT
TTGACCGCTCAGGTCATCGCACGAAGTTCACTAACGTTGGAAGAATGCTGCTGGAGCGCGGGCGCGTGCTGCTTGAAGCG
GCGGATAAACTCACCACCGATGCTGAAGCCCTGTCGCGTGGTTGGGAAACCCACCTGACGATCGTTACCGAAGCGCTGGT
GCCCACTCCGGATCTGTTTCCGCTGATTGAGAAACTGGCGACTAAATCAAACACCCAGCTGTCGATTATCACTGAGGTGC
TGGCCGGCGCCTGGGAGCGGCTGGAGCAGGGGCGGGCGGATATCGTTGTCGCACCGGATATGCATTTTCGTTCCTCTTCG
GAGATTAACTCGCGCAAACTCTATTCGGTGCTCAGCGTGTACGTCGCGGCGCCGGATCACCCGATCCATCAGGAGCCGGA
GCCGCTCTCTGAGGTTACCCGCGTGAAATACCGCGGCGTCGCGGTGGCGGATACCGCGCGCGAGCGGCCCGTTCTCACCG
TTCAACTGCTGGATAAACAGCCGCGTTTAACGGTGAGTACGATAGAAGATAAACGTCAGGCGCTACTGGCCGGACTGGGC
GTGGCGACTATGCCCTATCCGCTGGTGGAGAAGGATATTGCCGAAGGTCGCCTGCGGGTCGTCAGCCCGGAATACACCAA
TGAAATTGACATTATCATGGCCTGGCGACGGGACAGTATGGGCGAAGCGAAGTCCTGGTGTCTGCGTGAGATCCCCAAGC
TGTTTGCCGGCAGATAG

Upstream 100 bases:

>100_bases
TTGACCTCTCTTTACACTAAATCAATGGTAAAGGTATGGACGCTGTATTGTTAGCCAGATATTCTGCCCGGTATGTTCAA
ATTTCCTGAATGAGAAAGCG

Downstream 100 bases:

>100_bases
TGATGAAGACGCTCCTCCCGCTAGCGGGAGGAGCAGGAAGATTAGTAGGAAAAGGGTTTCGGATCGGGCCCGAAGCGATT
ATTGCCTTCGGTGCCGCGCT

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEA
ADKLTTDAEALSRGWETHLTIVTEALVPTPDLFPLIEKLATKSNTQLSIITEVLAGAWERLEQGRADIVVAPDMHFRSSS
EINSRKLYSVLSVYVAAPDHPIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLG
VATMPYPLVEKDIAEGRLRVVSPEYTNEIDIIMAWRRDSMGEAKSWCLREIPKLFAGR

Sequences:

>Translated_298_residues
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEA
ADKLTTDAEALSRGWETHLTIVTEALVPTPDLFPLIEKLATKSNTQLSIITEVLAGAWERLEQGRADIVVAPDMHFRSSS
EINSRKLYSVLSVYVAAPDHPIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLG
VATMPYPLVEKDIAEGRLRVVSPEYTNEIDIIMAWRRDSMGEAKSWCLREIPKLFAGR
>Mature_297_residues
AKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAA
DKLTTDAEALSRGWETHLTIVTEALVPTPDLFPLIEKLATKSNTQLSIITEVLAGAWERLEQGRADIVVAPDMHFRSSSE
INSRKLYSVLSVYVAAPDHPIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGV
ATMPYPLVEKDIAEGRLRVVSPEYTNEIDIIMAWRRDSMGEAKSWCLREIPKLFAGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789492, Length=298, Percent_Identity=93.9597315436242, Blast_Score=576, Evalue=1e-166,
Organism=Escherichia coli, GI87082024, Length=287, Percent_Identity=39.7212543554007, Blast_Score=194, Evalue=8e-51,
Organism=Escherichia coli, GI1787949, Length=282, Percent_Identity=28.7234042553192, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1786508, Length=296, Percent_Identity=28.3783783783784, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1786713, Length=296, Percent_Identity=27.3648648648649, Blast_Score=94, Evalue=9e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33328; Mature: 33197

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHR
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECCCCCC
TKFTNVGRMLLERGRVLLEAADKLTTDAEALSRGWETHLTIVTEALVPTPDLFPLIEKLA
CHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
TKSNTQLSIITEVLAGAWERLEQGRADIVVAPDMHFRSSSEINSRKLYSVLSVYVAAPDH
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
PIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLG
CCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHCC
VATMPYPLVEKDIAEGRLRVVSPEYTNEIDIIMAWRRDSMGEAKSWCLREIPKLFAGR
HHHCCCHHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHR
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECCCCCC
TKFTNVGRMLLERGRVLLEAADKLTTDAEALSRGWETHLTIVTEALVPTPDLFPLIEKLA
CHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
TKSNTQLSIITEVLAGAWERLEQGRADIVVAPDMHFRSSSEINSRKLYSVLSVYVAAPDH
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
PIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLG
CCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHCC
VATMPYPLVEKDIAEGRLRVVSPEYTNEIDIIMAWRRDSMGEAKSWCLREIPKLFAGR
HHHCCCHHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]