Click here to switch to the map view.

The map label for this gene is ygjD [H]

Identifier: 238896568

GI number: 238896568

Start: 4546125

End: 4547138

Strand: Reverse

Name: ygjD [H]

Synonym: KP1_4763

Alternate gene names: 238896568

Gene position: 4547138-4546125 (Counterclockwise)

Preceding gene: 238896572

Following gene: 238896558

Centisome position: 86.64

GC content: 63.31

Gene sequence:

>1014_bases
ATGCGTGTACTGGGCATTGAAACATCCTGCGATGAAACCGGCATCGCGATTTATGACGACCAGCAAGGTCTGTTAGCCAA
CCAATTGTATAGTCAGGTGAAACTGCATGCGGATTACGGCGGCGTGGTGCCGGAGCTGGCATCGCGCGACCACGTGCGCA
AAACGGTGCCGCTGATCCAGGCGGCGCTGAAAGAAGCCGGTCTGACGGCGAAAGATATCGACGCCGTCGCCTATACGGCG
GGTCCAGGCCTGGTCGGCGCGCTGCTGGTCGGGGCGACCGTTGGCCGGGCGCTGGCCTTCGCCTGGAACGTGCCGGCGAT
CCCGGTACACCATATGGAAGGGCATCTGCTGGCGCCGATGCTGGAAGATAATCCGCCGGCGTTCCCGTTCGTCGCGCTGC
TGGTTTCCGGCGGCCACACCCAGTTGATTAGCGTCACCGGTATTGGTCAGTATGAACTGCTGGGCGAGTCGATTGACGAT
GCGGCGGGCGAAGCCTTTGATAAGACGGCGAAGCTGCTGGGATTGGATTATCCCGGCGGGCCGATGCTGTCGAAAATGGC
GTCCCAGGGCACCGAAGGCCGCTTTGTCTTCCCGCGGCCGATGACCGACCGTCCGGGGCTGGACTTCAGCTTCTCCGGCC
TGAAGACCTTCGCCGCCAACACCATTCGCAGTAACGGCGACGATGAGCAAACCCGCGCCGACATCGCCCGGGCGTTTGAG
GATGCGGTCGTCGATACGCTGATGATTAAATGTCGCCGCGCGCTGGAGCAAACCGGCTTTAAGCGTCTGGTGATGGCGGG
AGGCGTGAGCGCCAACCGTACCCTGCGGGCGAAGCTGGCGGAGATGATGCAAAAACGCGGCGGCGAGGTGTTCTACGCCC
GCCCTGAGTTCTGTACTGACAACGGCGCGATGATCGCCTACGCCGGCATGGTGCGTCTGCAAACCGGCGCCAAAGCCGAG
CTCGGCGTGACGGTTCGCCCGCGCTGGCCGCTGGCCGAGCTGCCTGCCGCCTAA

Upstream 100 bases:

>100_bases
TGAGGAGTATACACGAAGAGAGCACCGGGGGTGAGCAAAGTTTTACATCGCCGGTCATTGGACCTACACTGCGCGGTATT
GAAGCGAGGTAAAACAACTC

Downstream 100 bases:

>100_bases
CGCATCCTGAAACAGGCCGACGTCACGTCGGCCTGCCTTCCTGACTACTCCATACTTTTACACAGCGAGCAGATGGCTCC
CTGATGCTTGTGCGAGTGCA

Product: putative DNA-binding/iron metalloprotein/AP endonuclease

Products: NA

Alternate protein names: Glycoprotease [H]

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MRVLGIETSCDETGIAIYDDQQGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALKEAGLTAKDIDAVAYTA
GPGLVGALLVGATVGRALAFAWNVPAIPVHHMEGHLLAPMLEDNPPAFPFVALLVSGGHTQLISVTGIGQYELLGESIDD
AAGEAFDKTAKLLGLDYPGGPMLSKMASQGTEGRFVFPRPMTDRPGLDFSFSGLKTFAANTIRSNGDDEQTRADIARAFE
DAVVDTLMIKCRRALEQTGFKRLVMAGGVSANRTLRAKLAEMMQKRGGEVFYARPEFCTDNGAMIAYAGMVRLQTGAKAE
LGVTVRPRWPLAELPAA

Sequences:

>Translated_337_residues
MRVLGIETSCDETGIAIYDDQQGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALKEAGLTAKDIDAVAYTA
GPGLVGALLVGATVGRALAFAWNVPAIPVHHMEGHLLAPMLEDNPPAFPFVALLVSGGHTQLISVTGIGQYELLGESIDD
AAGEAFDKTAKLLGLDYPGGPMLSKMASQGTEGRFVFPRPMTDRPGLDFSFSGLKTFAANTIRSNGDDEQTRADIARAFE
DAVVDTLMIKCRRALEQTGFKRLVMAGGVSANRTLRAKLAEMMQKRGGEVFYARPEFCTDNGAMIAYAGMVRLQTGAKAE
LGVTVRPRWPLAELPAA
>Mature_337_residues
MRVLGIETSCDETGIAIYDDQQGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALKEAGLTAKDIDAVAYTA
GPGLVGALLVGATVGRALAFAWNVPAIPVHHMEGHLLAPMLEDNPPAFPFVALLVSGGHTQLISVTGIGQYELLGESIDD
AAGEAFDKTAKLLGLDYPGGPMLSKMASQGTEGRFVFPRPMTDRPGLDFSFSGLKTFAANTIRSNGDDEQTRADIARAFE
DAVVDTLMIKCRRALEQTGFKRLVMAGGVSANRTLRAKLAEMMQKRGGEVFYARPEFCTDNGAMIAYAGMVRLQTGAKAE
LGVTVRPRWPLAELPAA

Specific function: Could Be A Metalloprotease. [C]

COG id: COG0533

COG function: function code O; Metal-dependent proteases with possible chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Homo sapiens, GI116812636, Length=355, Percent_Identity=34.0845070422535, Blast_Score=180, Evalue=1e-45,
Organism=Homo sapiens, GI8923380, Length=332, Percent_Identity=35.2409638554217, Blast_Score=160, Evalue=2e-39,
Organism=Escherichia coli, GI1789445, Length=337, Percent_Identity=93.4718100890208, Blast_Score=650, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17557464, Length=335, Percent_Identity=31.9402985074627, Blast_Score=170, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI71995670, Length=329, Percent_Identity=34.9544072948328, Blast_Score=153, Evalue=1e-37,
Organism=Saccharomyces cerevisiae, GI6320099, Length=368, Percent_Identity=32.0652173913043, Blast_Score=164, Evalue=1e-41,
Organism=Saccharomyces cerevisiae, GI6322891, Length=348, Percent_Identity=27.5862068965517, Blast_Score=122, Evalue=9e-29,
Organism=Drosophila melanogaster, GI20129063, Length=338, Percent_Identity=35.5029585798817, Blast_Score=192, Evalue=4e-49,
Organism=Drosophila melanogaster, GI21357207, Length=331, Percent_Identity=30.5135951661631, Blast_Score=159, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022450
- InterPro:   IPR000905
- InterPro:   IPR017860
- InterPro:   IPR017861 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: =3.4.24.57 [H]

Molecular weight: Translated: 36003; Mature: 36003

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS01016 GLYCOPROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLGIETSCDETGIAIYDDQQGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQ
CEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHEEECCCCCCCHHHHCHHHHHHHHHHHH
AALKEAGLTAKDIDAVAYTAGPGLVGALLVGATVGRALAFAWNVPAIPVHHMEGHLLAPM
HHHHHCCCCHHHCCEEEEECCCHHHHHHHHHHHHHHHHHEEECCCCCEEECCCCCEECCH
LEDNPPAFPFVALLVSGGHTQLISVTGIGQYELLGESIDDAAGEAFDKTAKLLGLDYPGG
HCCCCCCHHHHHHHHCCCCEEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC
PMLSKMASQGTEGRFVFPRPMTDRPGLDFSFSGLKTFAANTIRSNGDDEQTRADIARAFE
HHHHHHHHCCCCCEEECCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
DAVVDTLMIKCRRALEQTGFKRLVMAGGVSANRTLRAKLAEMMQKRGGEVFYARPEFCTD
HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCEECC
NGAMIAYAGMVRLQTGAKAELGVTVRPRWPLAELPAA
CCCEEEEEEEEEECCCCCCEEEEEECCCCCHHCCCCC
>Mature Secondary Structure
MRVLGIETSCDETGIAIYDDQQGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQ
CEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHEEECCCCCCCHHHHCHHHHHHHHHHHH
AALKEAGLTAKDIDAVAYTAGPGLVGALLVGATVGRALAFAWNVPAIPVHHMEGHLLAPM
HHHHHCCCCHHHCCEEEEECCCHHHHHHHHHHHHHHHHHEEECCCCCEEECCCCCEECCH
LEDNPPAFPFVALLVSGGHTQLISVTGIGQYELLGESIDDAAGEAFDKTAKLLGLDYPGG
HCCCCCCHHHHHHHHCCCCEEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC
PMLSKMASQGTEGRFVFPRPMTDRPGLDFSFSGLKTFAANTIRSNGDDEQTRADIARAFE
HHHHHHHHCCCCCEEECCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
DAVVDTLMIKCRRALEQTGFKRLVMAGGVSANRTLRAKLAEMMQKRGGEVFYARPEFCTD
HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCEECC
NGAMIAYAGMVRLQTGAKAELGVTVRPRWPLAELPAA
CCCEEEEEEEEEECCCCCCEEEEEECCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA