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The map label for this gene is yggR [H]

Identifier: 238896481

GI number: 238896481

Start: 4462330

End: 4463310

Strand: Reverse

Name: yggR [H]

Synonym: KP1_4660

Alternate gene names: 238896481

Gene position: 4463310-4462330 (Counterclockwise)

Preceding gene: 238896490

Following gene: 238896480

Centisome position: 85.04

GC content: 60.55

Gene sequence:

>981_bases
ATGAAGCTGGAAGAAATCGTAGCCCTTAGTGTAAAGCATAATGTCTCCGATCTACACCTGTGCAATTCCGCCGCACCGCG
CTGGCGGCGGCAGGGCAGGCTGGAGCCCGCGCCCTTTCCCGCGCCGGATATTGCGAATTTACTCAACGACTGGCTCGATG
CCGCACAGTTACTGCACTGGCAGGAACACGGCCAGATTGACTTTGCGCTGAACCTGGCCTGCGGTGCGCGGCTGCGCGCC
AGCGCCTTCGCCCATACGCGTGGGATATCGCTGGTGCTGCGTCTCCTTCCTGAACAGTGCCCGCGTCTGGATATGCTCGG
CGCCCCGCCTGCGCTGAGCGAACTGCTGGCGGAAGAGAGTGGTTTGCTGTTGGTCACCGGAGCGACGGGCAGCGGCAAGT
CGACCACCCTGGCGGCAATGGTGGGGCACCTCAATCAGCATCTTGATGGCCATATTCTGACGCTTGAAGATCCGGTGGAA
TTTATTCATCACAGCGAGCGCTGTCTGATCCAGCAGCGGGAAGTTGGCCGTCACTGTCCTTCGTTCGCCGCGGCGCTCCG
CGTGGCGCTGCGCCAGGATCCGGATGTGATCCTGCTCGGGGAGCTACGCGACAGCGAAACCATTCGCCTGGCGTTAACCG
CGGCGGAGACCGGGCACCTGGTAATGGCGACATTACATACCCGCGGCGCGGCGCCGGCGGTGGAGAGATTGATCGATGTC
TTTCCGGCGGAGGAGAAAGATCAGGTTCGTAGCCAGCTTGCCGGAAGCCTGTGCGCGGTGCTGGCGCAAAAATTGTTACC
TGCACGTCAGGGCGGGAGAGTTGCGCTATACGAGCTTCTGGTCAACACGCCAGCGGTGGCGAATTTGATCCGTGAAGGAA
AAGTACATCAATTGCCTGGTGTGATGCAGACCGGGATGCAGGCCGGAATGTTGACCTTTACCCAGAGTTTTCAGCAACGT
GTCGCTGCAGGCGCGCTATAA

Upstream 100 bases:

>100_bases
TTCTTCTGGCGCACGCCCGCATCGGGCGGCAGCACCGGAGATTTTGTCCCGGACCTGTGCCAGGTTATGCGCAATATCGT
TCATATTCCGAGGATGAGTT

Downstream 100 bases:

>100_bases
GATGAGAAAGAGATTGATATGACAGGTTAAATGATATGTTAGATGAATGTTTATTTGTTGTTTATTAATATTATTTGGTA
ATACAAATAACTTTTGATTA

Product: putative transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MKLEEIVALSVKHNVSDLHLCNSAAPRWRRQGRLEPAPFPAPDIANLLNDWLDAAQLLHWQEHGQIDFALNLACGARLRA
SAFAHTRGISLVLRLLPEQCPRLDMLGAPPALSELLAEESGLLLVTGATGSGKSTTLAAMVGHLNQHLDGHILTLEDPVE
FIHHSERCLIQQREVGRHCPSFAAALRVALRQDPDVILLGELRDSETIRLALTAAETGHLVMATLHTRGAAPAVERLIDV
FPAEEKDQVRSQLAGSLCAVLAQKLLPARQGGRVALYELLVNTPAVANLIREGKVHQLPGVMQTGMQAGMLTFTQSFQQR
VAAGAL

Sequences:

>Translated_326_residues
MKLEEIVALSVKHNVSDLHLCNSAAPRWRRQGRLEPAPFPAPDIANLLNDWLDAAQLLHWQEHGQIDFALNLACGARLRA
SAFAHTRGISLVLRLLPEQCPRLDMLGAPPALSELLAEESGLLLVTGATGSGKSTTLAAMVGHLNQHLDGHILTLEDPVE
FIHHSERCLIQQREVGRHCPSFAAALRVALRQDPDVILLGELRDSETIRLALTAAETGHLVMATLHTRGAAPAVERLIDV
FPAEEKDQVRSQLAGSLCAVLAQKLLPARQGGRVALYELLVNTPAVANLIREGKVHQLPGVMQTGMQAGMLTFTQSFQQR
VAAGAL
>Mature_326_residues
MKLEEIVALSVKHNVSDLHLCNSAAPRWRRQGRLEPAPFPAPDIANLLNDWLDAAQLLHWQEHGQIDFALNLACGARLRA
SAFAHTRGISLVLRLLPEQCPRLDMLGAPPALSELLAEESGLLLVTGATGSGKSTTLAAMVGHLNQHLDGHILTLEDPVE
FIHHSERCLIQQREVGRHCPSFAAALRVALRQDPDVILLGELRDSETIRLALTAAETGHLVMATLHTRGAAPAVERLIDV
FPAEEKDQVRSQLAGSLCAVLAQKLLPARQGGRVALYELLVNTPAVANLIREGKVHQLPGVMQTGMQAGMLTFTQSFQQR
VAAGAL

Specific function: Unknown

COG id: COG2805

COG function: function code NU; Tfp pilus assembly protein, pilus retraction ATPase PilT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI87082188, Length=326, Percent_Identity=71.1656441717791, Blast_Score=464, Evalue=1e-132,
Organism=Escherichia coli, GI1789723, Length=279, Percent_Identity=37.6344086021505, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1786296, Length=359, Percent_Identity=32.5905292479109, Blast_Score=115, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006321
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 35328; Mature: 35328

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLEEIVALSVKHNVSDLHLCNSAAPRWRRQGRLEPAPFPAPDIANLLNDWLDAAQLLHW
CCHHHHHHHHHHCCCCHHHHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
QEHGQIDFALNLACGARLRASAFAHTRGISLVLRLLPEQCPRLDMLGAPPALSELLAEES
HHCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
GLLLVTGATGSGKSTTLAAMVGHLNQHLDGHILTLEDPVEFIHHSERCLIQQREVGRHCP
CEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCHHHHHHHHHHHCCCH
SFAAALRVALRQDPDVILLGELRDSETIRLALTAAETGHLVMATLHTRGAAPAVERLIDV
HHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHH
FPAEEKDQVRSQLAGSLCAVLAQKLLPARQGGRVALYELLVNTPAVANLIREGKVHQLPG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHCCHHHHHHHHCCCCHHCCH
VMQTGMQAGMLTFTQSFQQRVAAGAL
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLEEIVALSVKHNVSDLHLCNSAAPRWRRQGRLEPAPFPAPDIANLLNDWLDAAQLLHW
CCHHHHHHHHHHCCCCHHHHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
QEHGQIDFALNLACGARLRASAFAHTRGISLVLRLLPEQCPRLDMLGAPPALSELLAEES
HHCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
GLLLVTGATGSGKSTTLAAMVGHLNQHLDGHILTLEDPVEFIHHSERCLIQQREVGRHCP
CEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCHHHHHHHHHHHCCCH
SFAAALRVALRQDPDVILLGELRDSETIRLALTAAETGHLVMATLHTRGAAPAVERLIDV
HHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHH
FPAEEKDQVRSQLAGSLCAVLAQKLLPARQGGRVALYELLVNTPAVANLIREGKVHQLPG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHCCHHHHHHHHCCCCHHCCH
VMQTGMQAGMLTFTQSFQQRVAAGAL
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]