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The map label for this gene is sorC [H]

Identifier: 238894156

GI number: 238894156

Start: 2057650

End: 2058612

Strand: Reverse

Name: sorC [H]

Synonym: KP1_2113

Alternate gene names: 238894156

Gene position: 2058612-2057650 (Counterclockwise)

Preceding gene: 238894157

Following gene: 238894149

Centisome position: 39.22

GC content: 55.45

Gene sequence:

>963_bases
ATGATTGAACAAGACTCAGATTACGCCCTGCTCACTGAAATTGCGGTGGCTTATTACGATCAGGAACAAACGCAGGAAGA
GATCGCCAAACGATTCGGCATTTCGCGTATCAAAGTCGGGCGCCTGCTGAAAAAAGCGCGCCAGGAAGGGATTGTTGAGA
TCAGCGTCAAATACCATCCGGTCTTCAGCTCCCAGATTGAGCAGCAGTTTATTTCGCACTTTGGCATTAAGCGCGCGCTA
ATTGCCCTGGATCACCATGATGAAGATGAACAGCGCCAGCAGGTGGCGGCCCTGGTCAGTAACTACCTTGCCGGGGTGTT
AAAAAACGATATGACCGTCACCGTTGGTCAGGGGCGCAATGTGGCCGCGGTGGCGAATCACGTTGGCGTGTTTCCTGAGC
GCCACTGCCGCTTTATCTGCGGCATCGGCGGAACCAAGCGTGACAATCAGCTGATTGACGCCGACCACATCAGCCGGAAT
CTGGCGCGCAAATTTAACGGCTTCAGCGAAACGCTTTACGCCCCGGCCTATGTGGAAACCCCGGAGCTGCGCGCGGCCTT
TATGCAAAACCGCCTGATTAAGGCCACGCTCGAACAGGCCAGCAAAGCTGACGTGGCGATCATCGGCCTCGGCGATATGA
ATGAAAACAGCTTTATGGTGCAGCTCGGCTGGTTTACGCCGCAGGAAATTGCCACCGCGCGTCAGGAACAGGGGGTGGTG
GGCGATCTGGCGGGGTACAGCTTTTTCAATATTCAGGGCAAACCCGTCGATACGGTGATGAATGACCGGGTCATTGGCTT
AAGTCTCGAACAGCTGCGGGCCATTCCCTGCGTCATCGCTATCGCCTCCGAAAGTACGAAAGCGACGGCGATCCTGGGGG
CATTACGCACCGGGGTTATCGATGTGCTGGCTACCAGCGCCTCGAACGCCCGTTCGGTCATTAATATGCAAAAGGCGCTA
TAA

Upstream 100 bases:

>100_bases
ACGCGCAAGGCTATTGCGACATTGTTCAACGCGTTACACAGGAATTTATTTTGCAGGCGCAGTAATATAAAAGGGACACC
AGAGATGGAAATTCCAGGCC

Downstream 100 bases:

>100_bases
ATAAGCCACGGCGCAGGCGGCGGATCAGCGTTGACCGCCGTCGTGCTGGCCTTTACCCTTCCCTTTTTCGTCTCGCCGCT
GCACAAAATCTTCAATGATG

Product: putative SorC-family transcriptional regulator

Products: NA

Alternate protein names: Sor operon activator [H]

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MIEQDSDYALLTEIAVAYYDQEQTQEEIAKRFGISRIKVGRLLKKARQEGIVEISVKYHPVFSSQIEQQFISHFGIKRAL
IALDHHDEDEQRQQVAALVSNYLAGVLKNDMTVTVGQGRNVAAVANHVGVFPERHCRFICGIGGTKRDNQLIDADHISRN
LARKFNGFSETLYAPAYVETPELRAAFMQNRLIKATLEQASKADVAIIGLGDMNENSFMVQLGWFTPQEIATARQEQGVV
GDLAGYSFFNIQGKPVDTVMNDRVIGLSLEQLRAIPCVIAIASESTKATAILGALRTGVIDVLATSASNARSVINMQKAL

Sequences:

>Translated_320_residues
MIEQDSDYALLTEIAVAYYDQEQTQEEIAKRFGISRIKVGRLLKKARQEGIVEISVKYHPVFSSQIEQQFISHFGIKRAL
IALDHHDEDEQRQQVAALVSNYLAGVLKNDMTVTVGQGRNVAAVANHVGVFPERHCRFICGIGGTKRDNQLIDADHISRN
LARKFNGFSETLYAPAYVETPELRAAFMQNRLIKATLEQASKADVAIIGLGDMNENSFMVQLGWFTPQEIATARQEQGVV
GDLAGYSFFNIQGKPVDTVMNDRVIGLSLEQLRAIPCVIAIASESTKATAILGALRTGVIDVLATSASNARSVINMQKAL
>Mature_320_residues
MIEQDSDYALLTEIAVAYYDQEQTQEEIAKRFGISRIKVGRLLKKARQEGIVEISVKYHPVFSSQIEQQFISHFGIKRAL
IALDHHDEDEQRQQVAALVSNYLAGVLKNDMTVTVGQGRNVAAVANHVGVFPERHCRFICGIGGTKRDNQLIDADHISRN
LARKFNGFSETLYAPAYVETPELRAAFMQNRLIKATLEQASKADVAIIGLGDMNENSFMVQLGWFTPQEIATARQEQGVV
GDLAGYSFFNIQGKPVDTVMNDRVIGLSLEQLRAIPCVIAIASESTKATAILGALRTGVIDVLATSASNARSVINMQKAL

Specific function: Positively regulates, in the presence of L-sorbose, and negatively regulates, in the absence of L-sorbose, the transcription of the sor operon [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=310, Percent_Identity=26.4516129032258, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082414, Length=301, Percent_Identity=25.2491694352159, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 35253; Mature: 35253

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEQDSDYALLTEIAVAYYDQEQTQEEIAKRFGISRIKVGRLLKKARQEGIVEISVKYHP
CCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEECC
VFSSQIEQQFISHFGIKRALIALDHHDEDEQRQQVAALVSNYLAGVLKNDMTVTVGQGRN
CHHHHHHHHHHHHHCHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
VAAVANHVGVFPERHCRFICGIGGTKRDNQLIDADHISRNLARKFNGFSETLYAPAYVET
HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCEECC
PELRAAFMQNRLIKATLEQASKADVAIIGLGDMNENSFMVQLGWFTPQEIATARQEQGVV
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCE
GDLAGYSFFNIQGKPVDTVMNDRVIGLSLEQLRAIPCVIAIASESTKATAILGALRTGVI
EECCCCEEEECCCCCHHHHHCCEEEEEEHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHH
DVLATSASNARSVINMQKAL
HHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MIEQDSDYALLTEIAVAYYDQEQTQEEIAKRFGISRIKVGRLLKKARQEGIVEISVKYHP
CCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEECC
VFSSQIEQQFISHFGIKRALIALDHHDEDEQRQQVAALVSNYLAGVLKNDMTVTVGQGRN
CHHHHHHHHHHHHHCHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
VAAVANHVGVFPERHCRFICGIGGTKRDNQLIDADHISRNLARKFNGFSETLYAPAYVET
HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCEECC
PELRAAFMQNRLIKATLEQASKADVAIIGLGDMNENSFMVQLGWFTPQEIATARQEQGVV
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCE
GDLAGYSFFNIQGKPVDTVMNDRVIGLSLEQLRAIPCVIAIASESTKATAILGALRTGVI
EECCCCEEEECCCCCHHHHHCCEEEEEEHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHH
DVLATSASNARSVINMQKAL
HHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]