Click here to switch to the map view.

The map label for this gene is ycfS [H]

Identifier: 238894148

GI number: 238894148

Start: 2047374

End: 2048333

Strand: Reverse

Name: ycfS [H]

Synonym: KP1_2105

Alternate gene names: 238894148

Gene position: 2048333-2047374 (Counterclockwise)

Preceding gene: 238894149

Following gene: 238894146

Centisome position: 39.03

GC content: 61.77

Gene sequence:

>960_bases
ATGAGAAACCGTTTCCCCGTGACGCTTTGGCTGACGCTAGTCGCGTTAGTCGCCGCGCTGGCCCTCCCCGCGCGCGCTAA
CACCTGGCCCCTTCCCCCGCCGGGCAGCCGGCTGGTGGGTCAGAATCAGTTTCATGTGGTACAGGATGACGGCGGTTCGC
TGGAAGCGATTGCCAAGAAGTACAATGTCGGCTTCCTGGCCCTGCTGCAGGCCAATCCCGGGGTTGACCCCTATGTTCCG
CGCGCCGGCAGCGTGCTGACCATCCCCCTGCAGACGCTACTGCCCGATGCGCCGCGCGAAGGGCTGGTGATTAACCTCGC
CGAACTGCGCCTCTATTATTACCCGCCGGGCAAGAATGAAGTGACCGTCTACCCAATCGGCATCGGTCAGCTGGGCGGAA
CCACCATCACACCGACGATGGTCACAACCGTGTCCGACAAACGGGCCAATCCGACCTGGACACCTACCGCCAATATTCGC
GCGCGCTACAAGGCTATGGGGATTGAGCTGCCGGCGGTGGTGCCTGCTGGTCCTGACAATCCGATGGGCCATCACGCCAT
CCGCCTCGCCGCCTATGGCGGAGTCTATCTCCTGCACGGCACCAATGCCGATTTCGGCATCGGTATGCGCGTCAGTTCCG
GCTGCATTCGTCTGCGCGATAACGATATCAAGGCGCTGTACAACACTATCTCGCCGGGCACGAAGGTGAACATTATCAAC
ACGCCGATCAAGGCGTCGGTTGAGCCGGATGGCCGCCGTCTGGTTGAGGTCCATCAGCCGCTGTCTGAGCATATCGATGA
CGACCCGCAGACCCTGCCCATTACGCTTAATGCGGCCATGACTGCGTTCAAACAGGCGCCGCAGACCGACGGGACGGTGA
TGGAGCGCGCGATGAATTACCGCTCGGGCATGCCGATTGACGTCACCCGTCATGCTGAACCTGGACCGCAGTCGCTGTAG

Upstream 100 bases:

>100_bases
CATTTTGCAATCCGCCTGGATTTCCCCACACAGACTCACGCCATAATCTCATCTGCTTTTCGTATAAAAATAACCACTTA
CATATTTTGGAGTTATGGTA

Downstream 100 bases:

>100_bases
TCTTACGCTGCATAAAACAAAAAACCCGCCTGATGGCGGGTTTTTTGTTGGCAAGGGTCAAACAGGGGTACAACAGGGTC
TTACTCATCGCCGTCCGGTG

Product: putative enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MRNRFPVTLWLTLVALVAALALPARANTWPLPPPGSRLVGQNQFHVVQDDGGSLEAIAKKYNVGFLALLQANPGVDPYVP
RAGSVLTIPLQTLLPDAPREGLVINLAELRLYYYPPGKNEVTVYPIGIGQLGGTTITPTMVTTVSDKRANPTWTPTANIR
ARYKAMGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDNDIKALYNTISPGTKVNIIN
TPIKASVEPDGRRLVEVHQPLSEHIDDDPQTLPITLNAAMTAFKQAPQTDGTVMERAMNYRSGMPIDVTRHAEPGPQSL

Sequences:

>Translated_319_residues
MRNRFPVTLWLTLVALVAALALPARANTWPLPPPGSRLVGQNQFHVVQDDGGSLEAIAKKYNVGFLALLQANPGVDPYVP
RAGSVLTIPLQTLLPDAPREGLVINLAELRLYYYPPGKNEVTVYPIGIGQLGGTTITPTMVTTVSDKRANPTWTPTANIR
ARYKAMGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDNDIKALYNTISPGTKVNIIN
TPIKASVEPDGRRLVEVHQPLSEHIDDDPQTLPITLNAAMTAFKQAPQTDGTVMERAMNYRSGMPIDVTRHAEPGPQSL
>Mature_319_residues
MRNRFPVTLWLTLVALVAALALPARANTWPLPPPGSRLVGQNQFHVVQDDGGSLEAIAKKYNVGFLALLQANPGVDPYVP
RAGSVLTIPLQTLLPDAPREGLVINLAELRLYYYPPGKNEVTVYPIGIGQLGGTTITPTMVTTVSDKRANPTWTPTANIR
ARYKAMGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDNDIKALYNTISPGTKVNIIN
TPIKASVEPDGRRLVEVHQPLSEHIDDDPQTLPITLNAAMTAFKQAPQTDGTVMERAMNYRSGMPIDVTRHAEPGPQSL

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=321, Percent_Identity=80.6853582554517, Blast_Score=516, Evalue=1e-148,
Organism=Escherichia coli, GI1787968, Length=307, Percent_Identity=52.1172638436482, Blast_Score=305, Evalue=3e-84,
Organism=Escherichia coli, GI1787040, Length=302, Percent_Identity=50, Blast_Score=284, Evalue=4e-78,
Organism=Escherichia coli, GI1788299, Length=290, Percent_Identity=50.6896551724138, Blast_Score=271, Evalue=3e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 34426; Mature: 34426

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNRFPVTLWLTLVALVAALALPARANTWPLPPPGSRLVGQNQFHVVQDDGGSLEAIAKK
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHH
YNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGLVINLAELRLYYYPPGKNE
CCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCCCCC
VTVYPIGIGQLGGTTITPTMVTTVSDKRANPTWTPTANIRARYKAMGIELPAVVPAGPDN
EEEEEEECCCCCCCEECCEEEEEECCCCCCCCCCCCCCCEEEEEEECEECCEEECCCCCC
PMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDNDIKALYNTISPGTKVNIIN
CCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCEEEEECCCHHHHHHHCCCCCEEEEEE
TPIKASVEPDGRRLVEVHQPLSEHIDDDPQTLPITLNAAMTAFKQAPQTDGTVMERAMNY
CCEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHCCCCCHHHHHHHHHH
RSGMPIDVTRHAEPGPQSL
CCCCCEEEEECCCCCCCCC
>Mature Secondary Structure
MRNRFPVTLWLTLVALVAALALPARANTWPLPPPGSRLVGQNQFHVVQDDGGSLEAIAKK
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHH
YNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGLVINLAELRLYYYPPGKNE
CCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCCCCC
VTVYPIGIGQLGGTTITPTMVTTVSDKRANPTWTPTANIRARYKAMGIELPAVVPAGPDN
EEEEEEECCCCCCCEECCEEEEEECCCCCCCCCCCCCCCEEEEEEECEECCEEECCCCCC
PMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDNDIKALYNTISPGTKVNIIN
CCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCEEEEECCCHHHHHHHCCCCCEEEEEE
TPIKASVEPDGRRLVEVHQPLSEHIDDDPQTLPITLNAAMTAFKQAPQTDGTVMERAMNY
CCEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHCCCCCHHHHHHHHHH
RSGMPIDVTRHAEPGPQSL
CCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]