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The map label for this gene is rbsC [H]

Identifier: 238893524

GI number: 238893524

Start: 1371590

End: 1372621

Strand: Direct

Name: rbsC [H]

Synonym: KP1_1424

Alternate gene names: 238893524

Gene position: 1371590-1372621 (Clockwise)

Preceding gene: 238893523

Following gene: 238893525

Centisome position: 26.13

GC content: 58.62

Gene sequence:

>1032_bases
ATGAGTAATATGAAATTAACGGCGGCTCCGGCCAGCGAGGGTTCCTCCTTCTTCGCTAATTTGCGGCATAAAATGCCGAA
AGATACCGGCATCTTTGTGGTGATGCTGGTGATTGCCCTGACCTTTGAAATCGCCGGCTGGTATGTTCGCGACCAGTCGT
TCCTGCTCAATACCAACCGGCTGGTGCTGATTGTGCTGCAGGTGGCGATTATCGGCATCATCGCCGTGGGCGTCACCCAG
GTGATCATCACCACCGGGATTGACCTCTCCTCCGGCTCGGTTATTGCCCTTGCGGCGGTGGTGGCGGCCAGCCTGGCGCA
AACCTCCGATAGCCTGTCGCCAATGTTCCCGGCGCTGGTCAACCTGCCGGCGGTGATCCCCATTTGCGCGGGGATCGGCG
TCGGCCTGCTGTGCGGCCTGACCAACGGTTTCCTGGTGACGCGGACCGGTATCCCGCCGTTTATCGCCACCCTCGGGATG
ATGGTTTCGGCGCGCGGTCTGGCGCAGTATTACACTCAGGGCAACCCGATCAGCTTCCTCTCCGACAGCTTTACGGCGAT
AGGCCAGGGTGCGATGCCGGTGATTATCTTCTTCGTGATCGCCGCCGTGTTTCACATTGCGCTGAAGCATACCCGGTATG
GCAAATATGTGTATGCCATCGGCGGCAACATGACCTCGGCCAAAGTGTCCGGCATCAACGTGAATAAATATCTGGTGATA
GTCTACACCATCGCCGGGGCGCTCTCCGGGCTGGCGGGGGTGGTGCTGGCGGCGCGCGTCAGCAGCGGCCAGTCGAGTAT
GGGGATGTCCTACGAGCTGGACGCGATTGCCGCCGCGGTGATCGGCGGCAGCAGCTTAATGGGCGGAGTGGGGCGCATTA
CCGGCACCCTGATTGGCGCGATGATCCTTGGCCTGATCAAAAGCGGTTTTACCTTTGTCGGCGTCGATGCCTATGTGCAG
GATATTATTAAAGGCATCATTATCGTTGCGGCAGTAACCATCGATATGCGTCGCAACCGGAAAAAACACTAA

Upstream 100 bases:

>100_bases
GTCATGGTGATGCATGAAGGTCGTATCACCGGCATCCTGGAAAAAGACGAAGCCGACCAGGAAACCATTTTGTCGTTGGC
ATCCCATTGAGGCACAGAGA

Downstream 100 bases:

>100_bases
TCTTATCAACGGGCGGCAACGGCGAAGGATGTCGTTGCCGCCCGTCCTGTCCAGAAATAAACAAAATACTCCCCGCCAGG
CTCCGCCTGTCTGTTTTGCC

Product: sugar ABC transport system permease component

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MSNMKLTAAPASEGSSFFANLRHKMPKDTGIFVVMLVIALTFEIAGWYVRDQSFLLNTNRLVLIVLQVAIIGIIAVGVTQ
VIITTGIDLSSGSVIALAAVVAASLAQTSDSLSPMFPALVNLPAVIPICAGIGVGLLCGLTNGFLVTRTGIPPFIATLGM
MVSARGLAQYYTQGNPISFLSDSFTAIGQGAMPVIIFFVIAAVFHIALKHTRYGKYVYAIGGNMTSAKVSGINVNKYLVI
VYTIAGALSGLAGVVLAARVSSGQSSMGMSYELDAIAAAVIGGSSLMGGVGRITGTLIGAMILGLIKSGFTFVGVDAYVQ
DIIKGIIIVAAVTIDMRRNRKKH

Sequences:

>Translated_343_residues
MSNMKLTAAPASEGSSFFANLRHKMPKDTGIFVVMLVIALTFEIAGWYVRDQSFLLNTNRLVLIVLQVAIIGIIAVGVTQ
VIITTGIDLSSGSVIALAAVVAASLAQTSDSLSPMFPALVNLPAVIPICAGIGVGLLCGLTNGFLVTRTGIPPFIATLGM
MVSARGLAQYYTQGNPISFLSDSFTAIGQGAMPVIIFFVIAAVFHIALKHTRYGKYVYAIGGNMTSAKVSGINVNKYLVI
VYTIAGALSGLAGVVLAARVSSGQSSMGMSYELDAIAAAVIGGSSLMGGVGRITGTLIGAMILGLIKSGFTFVGVDAYVQ
DIIKGIIIVAAVTIDMRRNRKKH
>Mature_342_residues
SNMKLTAAPASEGSSFFANLRHKMPKDTGIFVVMLVIALTFEIAGWYVRDQSFLLNTNRLVLIVLQVAIIGIIAVGVTQV
IITTGIDLSSGSVIALAAVVAASLAQTSDSLSPMFPALVNLPAVIPICAGIGVGLLCGLTNGFLVTRTGIPPFIATLGMM
VSARGLAQYYTQGNPISFLSDSFTAIGQGAMPVIIFFVIAAVFHIALKHTRYGKYVYAIGGNMTSAKVSGINVNKYLVIV
YTIAGALSGLAGVVLAARVSSGQSSMGMSYELDAIAAAVIGGSSLMGGVGRITGTLIGAMILGLIKSGFTFVGVDAYVQD
IIKGIIIVAAVTIDMRRNRKKH

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=290, Percent_Identity=42.0689655172414, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1788471, Length=329, Percent_Identity=37.9939209726444, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1790524, Length=332, Percent_Identity=32.2289156626506, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1788896, Length=353, Percent_Identity=28.8951841359773, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI145693152, Length=283, Percent_Identity=32.8621908127208, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1789992, Length=399, Percent_Identity=31.077694235589, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI87082395, Length=289, Percent_Identity=35.6401384083045, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI145693214, Length=258, Percent_Identity=35.2713178294574, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1787794, Length=303, Percent_Identity=30.3630363036304, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787793, Length=317, Percent_Identity=27.7602523659306, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35655; Mature: 35524

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNMKLTAAPASEGSSFFANLRHKMPKDTGIFVVMLVIALTFEIAGWYVRDQSFLLNTNR
CCCCEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCEEEECCEEEECCCH
LVLIVLQVAIIGIIAVGVTQVIITTGIDLSSGSVIALAAVVAASLAQTSDSLSPMFPALV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
NLPAVIPICAGIGVGLLCGLTNGFLVTRTGIPPFIATLGMMVSARGLAQYYTQGNPISFL
CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
SDSFTAIGQGAMPVIIFFVIAAVFHIALKHTRYGKYVYAIGGNMTSAKVSGINVNKYLVI
HCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEECCEECCHHEEE
VYTIAGALSGLAGVVLAARVSSGQSSMGMSYELDAIAAAVIGGSSLMGGVGRITGTLIGA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHCCHHHHCHHHHHHHHHHHH
MILGLIKSGFTFVGVDAYVQDIIKGIIIVAAVTIDMRRNRKKH
HHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SNMKLTAAPASEGSSFFANLRHKMPKDTGIFVVMLVIALTFEIAGWYVRDQSFLLNTNR
CCCEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCEEEECCEEEECCCH
LVLIVLQVAIIGIIAVGVTQVIITTGIDLSSGSVIALAAVVAASLAQTSDSLSPMFPALV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
NLPAVIPICAGIGVGLLCGLTNGFLVTRTGIPPFIATLGMMVSARGLAQYYTQGNPISFL
CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
SDSFTAIGQGAMPVIIFFVIAAVFHIALKHTRYGKYVYAIGGNMTSAKVSGINVNKYLVI
HCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEECCEECCHHEEE
VYTIAGALSGLAGVVLAARVSSGQSSMGMSYELDAIAAAVIGGSSLMGGVGRITGTLIGA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHCCHHHHCHHHHHHHHHHHH
MILGLIKSGFTFVGVDAYVQDIIKGIIIVAAVTIDMRRNRKKH
HHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]