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The map label for this gene is yjdL [H]

Identifier: 238893513

GI number: 238893513

Start: 1358533

End: 1360008

Strand: Direct

Name: yjdL [H]

Synonym: KP1_1412

Alternate gene names: 238893513

Gene position: 1358533-1360008 (Clockwise)

Preceding gene: 238893512

Following gene: 238893514

Centisome position: 25.88

GC content: 62.13

Gene sequence:

>1476_bases
ATGAAAACACCCTCACAGCCGCGCGCGATTTACTACATCGTTGCGATCCAGATCTGGGAGTACTTCAGCTTTTACGGCAT
GCGCGCCTTACTCATCCTTTACCTTACCCACCAGCTTGGCTTCGACGACAGCCACGCCATCAGCCTGTTCAGCGCTTACG
CATCTCTGGTTTACGTTACCCCTATTCTCGGCGGCTGGCTTGCCGACCGCCTGCTCGGCAACCGCACGGCGGTAATTGCC
GGGGCGCTGTTGATGACCCTCGGCCATGTGGTGCTGGGCGTTGAGTCGACCTCCGCATGGAGTTTGTACGTCGCGCTGGC
GATCATCATCTGCGGCTACGGCCTGTTTAAATCCAATATCAGCTGCCTGCTCGGCGAACTGTACGCTCACGACGACCCGC
GTCGCGACGGCGGTTTCTCGCTGCTGTACGCCGCCGGCAACGTCGGCTCGATTGCCGCGCCCATCGCCTGCGGACTGGCG
GCGCAGTGGTACGGCTGGCATATCGGCTTCGCCCTTGCGGGGATCGGTATGTTTATCGGCCTGATGATTTTCTTAAGCGG
CAGCCGCCACTTCCGGCATACCCGCGGCGTTGATAAACCGGCGCTGCGGGCGGTGAAGTTCGTGCTGCCGACCTGGGGCT
GGCTGCTGGTGATGCTCTGCCTGGCGCCGGTATTTTTCACTCTACTGCTGCAAAACAACTGGTCCGGCTATCTGCTGGCG
ATCGTCTGCCTGTTCGCCGCCCAGATGGTGGCGCGGATCATGATCAAAGCCCCGGAGCATCGTCGCGCGCTGTGGCAGAT
CGTCCTGCTGATGCTCGCCGGAACGCTGTTCTGGGTGCTGGCGCAGCAGGGCGGGAGCTCGATTAGCCTGTTTATCGACC
ACTTCGTCAATCGTCGTCTGCTGAACTGGGACGTGCCGACCGCGCTGTTCCAGTCAGTTAACGCGATAGCGGTGATGGCG
GCCGGCGTGGTGCTGGCGTGGCTGATGCGCCCGGAAGGCAGCGTGCGTTCAGTGCTGCGCGTCTGGCTGAAATTTTCTTT
CGGCCTGCTGCTGATGGGCGGCGGCTTTATGCTGCTGGCGCTCAATGCCCGCCATGGCGCGGCTGACGGTCAGGCCTCAA
TGGGCATGATGGTCGCCGGGCTGGCGATGATGGGCTTTGCCGAACTGTTTATCGACCCGGTGGCGATGGCGCAAATCACC
CGTCTGAACATGCCCGGCGTCACCGGCGTATTGACCGGCATTTATATGCTGGCCACCGGCGCGGTGGCCAACTGGCTGGC
GGGCGTGGTCGCCCAGCAAACCACCGAATCGCAAATCAGCGATACGGCGATTGCCGCCTATCAGCATTTCTTCGCGCAGA
TGGGCGAATGGACCCTCGGCTGCGTGGCGGTGATGGTCATTATCGCCTTTGCCGCGGCCTGTAGCGTTGGCAAACGTCGT
GCGGCTGCCGGTGAAATTACCGGCGGCGGCGCCTGA

Upstream 100 bases:

>100_bases
GTTACACCGTTAAAGTGCTGAAAGAAGAGAATAACAAGTAATAGACGCACACCAGGGAAGTGGCTTGCCACTTCCCTTTT
TCACGCTGCAAGGAGAACAC

Downstream 100 bases:

>100_bases
CGCTCGTCCCGGCTCGTGGCGTAAACACCTTATCCGGGCCGCGATTCGTAGCCCCGGTAAGCGCAGCGCGACCGGGGGCA
TTACCTCAACAGCGGAGCGC

Product: putative POT family di-/tripeptide transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MKTPSQPRAIYYIVAIQIWEYFSFYGMRALLILYLTHQLGFDDSHAISLFSAYASLVYVTPILGGWLADRLLGNRTAVIA
GALLMTLGHVVLGVESTSAWSLYVALAIIICGYGLFKSNISCLLGELYAHDDPRRDGGFSLLYAAGNVGSIAAPIACGLA
AQWYGWHIGFALAGIGMFIGLMIFLSGSRHFRHTRGVDKPALRAVKFVLPTWGWLLVMLCLAPVFFTLLLQNNWSGYLLA
IVCLFAAQMVARIMIKAPEHRRALWQIVLLMLAGTLFWVLAQQGGSSISLFIDHFVNRRLLNWDVPTALFQSVNAIAVMA
AGVVLAWLMRPEGSVRSVLRVWLKFSFGLLLMGGGFMLLALNARHGAADGQASMGMMVAGLAMMGFAELFIDPVAMAQIT
RLNMPGVTGVLTGIYMLATGAVANWLAGVVAQQTTESQISDTAIAAYQHFFAQMGEWTLGCVAVMVIIAFAAACSVGKRR
AAAGEITGGGA

Sequences:

>Translated_491_residues
MKTPSQPRAIYYIVAIQIWEYFSFYGMRALLILYLTHQLGFDDSHAISLFSAYASLVYVTPILGGWLADRLLGNRTAVIA
GALLMTLGHVVLGVESTSAWSLYVALAIIICGYGLFKSNISCLLGELYAHDDPRRDGGFSLLYAAGNVGSIAAPIACGLA
AQWYGWHIGFALAGIGMFIGLMIFLSGSRHFRHTRGVDKPALRAVKFVLPTWGWLLVMLCLAPVFFTLLLQNNWSGYLLA
IVCLFAAQMVARIMIKAPEHRRALWQIVLLMLAGTLFWVLAQQGGSSISLFIDHFVNRRLLNWDVPTALFQSVNAIAVMA
AGVVLAWLMRPEGSVRSVLRVWLKFSFGLLLMGGGFMLLALNARHGAADGQASMGMMVAGLAMMGFAELFIDPVAMAQIT
RLNMPGVTGVLTGIYMLATGAVANWLAGVVAQQTTESQISDTAIAAYQHFFAQMGEWTLGCVAVMVIIAFAAACSVGKRR
AAAGEITGGGA
>Mature_491_residues
MKTPSQPRAIYYIVAIQIWEYFSFYGMRALLILYLTHQLGFDDSHAISLFSAYASLVYVTPILGGWLADRLLGNRTAVIA
GALLMTLGHVVLGVESTSAWSLYVALAIIICGYGLFKSNISCLLGELYAHDDPRRDGGFSLLYAAGNVGSIAAPIACGLA
AQWYGWHIGFALAGIGMFIGLMIFLSGSRHFRHTRGVDKPALRAVKFVLPTWGWLLVMLCLAPVFFTLLLQNNWSGYLLA
IVCLFAAQMVARIMIKAPEHRRALWQIVLLMLAGTLFWVLAQQGGSSISLFIDHFVNRRLLNWDVPTALFQSVNAIAVMA
AGVVLAWLMRPEGSVRSVLRVWLKFSFGLLLMGGGFMLLALNARHGAADGQASMGMMVAGLAMMGFAELFIDPVAMAQIT
RLNMPGVTGVLTGIYMLATGAVANWLAGVVAQQTTESQISDTAIAAYQHFFAQMGEWTLGCVAVMVIIAFAAACSVGKRR
AAAGEITGGGA

Specific function: Probable proton-dependent permease that transports di- and tripeptides. Shows significantly higher specificity towards dipeptides [H]

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Homo sapiens, GI4827008, Length=215, Percent_Identity=27.906976744186, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI226371746, Length=199, Percent_Identity=31.6582914572864, Blast_Score=86, Evalue=6e-17,
Organism=Escherichia coli, GI1790572, Length=471, Percent_Identity=83.651804670913, Blast_Score=797, Evalue=0.0,
Organism=Escherichia coli, GI1786927, Length=491, Percent_Identity=58.2484725050917, Blast_Score=555, Evalue=1e-159,
Organism=Escherichia coli, GI1787922, Length=476, Percent_Identity=28.9915966386555, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1789911, Length=472, Percent_Identity=28.6016949152542, Blast_Score=175, Evalue=5e-45,
Organism=Caenorhabditis elegans, GI17569141, Length=310, Percent_Identity=26.1290322580645, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71987453, Length=184, Percent_Identity=28.804347826087, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24639581, Length=345, Percent_Identity=25.5072463768116, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24639583, Length=345, Percent_Identity=25.5072463768116, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24639585, Length=345, Percent_Identity=25.5072463768116, Blast_Score=89, Evalue=7e-18,
Organism=Drosophila melanogaster, GI28571098, Length=373, Percent_Identity=23.5924932975871, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI28571102, Length=373, Percent_Identity=23.5924932975871, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28571100, Length=373, Percent_Identity=23.5924932975871, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 52993; Mature: 52993

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS50850 MFS ; PS01022 PTR2_1 ; PS01023 PTR2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPSQPRAIYYIVAIQIWEYFSFYGMRALLILYLTHQLGFDDSHAISLFSAYASLVYVT
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
PILGGWLADRLLGNRTAVIAGALLMTLGHVVLGVESTSAWSLYVALAIIICGYGLFKSNI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHH
SCLLGELYAHDDPRRDGGFSLLYAAGNVGSIAAPIACGLAAQWYGWHIGFALAGIGMFIG
HHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMIFLSGSRHFRHTRGVDKPALRAVKFVLPTWGWLLVMLCLAPVFFTLLLQNNWSGYLLA
HHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
IVCLFAAQMVARIMIKAPEHRRALWQIVLLMLAGTLFWVLAQQGGSSISLFIDHFVNRRL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
LNWDVPTALFQSVNAIAVMAAGVVLAWLMRPEGSVRSVLRVWLKFSFGLLLMGGGFMLLA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE
LNARHGAADGQASMGMMVAGLAMMGFAELFIDPVAMAQITRLNMPGVTGVLTGIYMLATG
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
AVANWLAGVVAQQTTESQISDTAIAAYQHFFAQMGEWTLGCVAVMVIIAFAAACSVGKRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AAAGEITGGGA
CCCCCCCCCCC
>Mature Secondary Structure
MKTPSQPRAIYYIVAIQIWEYFSFYGMRALLILYLTHQLGFDDSHAISLFSAYASLVYVT
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
PILGGWLADRLLGNRTAVIAGALLMTLGHVVLGVESTSAWSLYVALAIIICGYGLFKSNI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHH
SCLLGELYAHDDPRRDGGFSLLYAAGNVGSIAAPIACGLAAQWYGWHIGFALAGIGMFIG
HHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMIFLSGSRHFRHTRGVDKPALRAVKFVLPTWGWLLVMLCLAPVFFTLLLQNNWSGYLLA
HHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
IVCLFAAQMVARIMIKAPEHRRALWQIVLLMLAGTLFWVLAQQGGSSISLFIDHFVNRRL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
LNWDVPTALFQSVNAIAVMAAGVVLAWLMRPEGSVRSVLRVWLKFSFGLLLMGGGFMLLA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE
LNARHGAADGQASMGMMVAGLAMMGFAELFIDPVAMAQITRLNMPGVTGVLTGIYMLATG
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
AVANWLAGVVAQQTTESQISDTAIAAYQHFFAQMGEWTLGCVAVMVIIAFAAACSVGKRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AAAGEITGGGA
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]