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The map label for this gene is ycbV [H]

Identifier: 238893506

GI number: 238893506

Start: 1348964

End: 1349989

Strand: Direct

Name: ycbV [H]

Synonym: KP1_1404

Alternate gene names: 238893506

Gene position: 1348964-1349989 (Clockwise)

Preceding gene: 238893505

Following gene: 238893508

Centisome position: 25.7

GC content: 56.04

Gene sequence:

>1026_bases
ATGAAAAAAATCATCGCATCAGGGGTACCTCTTCTGCTGGCCGGCGGGTACTGCGCTTCGCTGTCGGCAGCGTGCCAGAT
GGTCAGTGGCAAAACTATCGAGTATTCAGTGAACGTCAGCCAGGCCAGTATCAACCTTGACGTCAGCGATCTCCCCATCG
GCTCCCTGCTATACAGCTACGGAGGGATGATTATCACTAATAACGAACGCTGGGAGATCGCCTGCAGCGGCAGCGAGCCC
GGCGGGTTTCAGAGCATTGGCGGTTCCCGGGTCGGCCCGGCGGGAGACGGCAAGCCGGGGGATATCTACAGCATCGACCG
CCTGCCGGGCATCGGCTACAGCTTTCAGATGGGGGAACAGGATGGCATTAATTTCGATCCCCTGTTCACGGCCTGGCCTT
CCGCGCCGGTATTTTCCGGCCAGCGCGCATTTCAGGCGGAAAATAAAAAACCGACCATCTATTTCTGGCGGATTGCCGAT
AACGGCGGTCTACCGCCGCCGGGCGAATATTGCCTTAATGATTACCTTGGCGATATTTATCTTGGCGGAGTACAGGCGAT
GCGCTTCAGCGTCAGCGGGCTCTGTATTCAGGTCAAATCACCCACCTGCAAGATTACTGACGACAGTAAAAACATTAACG
TCTTCCTCGGACGGCATAACAAAACCGCATTTACCGGGCTCAACAGCACCACCGCCCCGGTTCCTTTTAACATCAACCTG
ACGAACTGTGAAAATGTCGGCAGCGTGTTTATGCAGTTTAACGCGACGGTGGACAGCGCTGTCGCCGCCAACGAAGTGAT
TAAAATCGATGACCAACCTGAAGGGGCATCCGGACTTGGCGTGCAGATCCTCAGTGCCGGCGGCTCGCTGGTGCCGCTAA
ACCAGGTGAGCCAGGTCTGGTCCGGGAAAAAAGGCAGTCAGACGAACTATCGTTTATCCTATCAGGCCCGCTATATCCAG
ACGCAGCCCGCAGTGACTGAGGGCGAAGCGAACGCCAGCGCGACCTTCGTGGTGACTTATAACTGA

Upstream 100 bases:

>100_bases
CGCTGCCGGTTGGCCTATGCCATCCGCGACGACGCGGTGCAGCAGGTTAGCAGCGGCACGCCGCATCAGGTCTGCCGGCC
GGGAATAAAGGAGAAGTAAT

Downstream 100 bases:

>100_bases
TCTGCCTGGCGGCGCGGCGCCGTCAGGCATGCGCCAGTAAAGGAAACATCAACTTCCTGTCTTTAAACAGGTTTTCCTTC
TGGTCATAGACGAAGAGGAT

Product: putative fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MKKIIASGVPLLLAGGYCASLSAACQMVSGKTIEYSVNVSQASINLDVSDLPIGSLLYSYGGMIITNNERWEIACSGSEP
GGFQSIGGSRVGPAGDGKPGDIYSIDRLPGIGYSFQMGEQDGINFDPLFTAWPSAPVFSGQRAFQAENKKPTIYFWRIAD
NGGLPPPGEYCLNDYLGDIYLGGVQAMRFSVSGLCIQVKSPTCKITDDSKNINVFLGRHNKTAFTGLNSTTAPVPFNINL
TNCENVGSVFMQFNATVDSAVAANEVIKIDDQPEGASGLGVQILSAGGSLVPLNQVSQVWSGKKGSQTNYRLSYQARYIQ
TQPAVTEGEANASATFVVTYN

Sequences:

>Translated_341_residues
MKKIIASGVPLLLAGGYCASLSAACQMVSGKTIEYSVNVSQASINLDVSDLPIGSLLYSYGGMIITNNERWEIACSGSEP
GGFQSIGGSRVGPAGDGKPGDIYSIDRLPGIGYSFQMGEQDGINFDPLFTAWPSAPVFSGQRAFQAENKKPTIYFWRIAD
NGGLPPPGEYCLNDYLGDIYLGGVQAMRFSVSGLCIQVKSPTCKITDDSKNINVFLGRHNKTAFTGLNSTTAPVPFNINL
TNCENVGSVFMQFNATVDSAVAANEVIKIDDQPEGASGLGVQILSAGGSLVPLNQVSQVWSGKKGSQTNYRLSYQARYIQ
TQPAVTEGEANASATFVVTYN
>Mature_341_residues
MKKIIASGVPLLLAGGYCASLSAACQMVSGKTIEYSVNVSQASINLDVSDLPIGSLLYSYGGMIITNNERWEIACSGSEP
GGFQSIGGSRVGPAGDGKPGDIYSIDRLPGIGYSFQMGEQDGINFDPLFTAWPSAPVFSGQRAFQAENKKPTIYFWRIAD
NGGLPPPGEYCLNDYLGDIYLGGVQAMRFSVSGLCIQVKSPTCKITDDSKNINVFLGRHNKTAFTGLNSTTAPVPFNINL
TNCENVGSVFMQFNATVDSAVAANEVIKIDDQPEGASGLGVQILSAGGSLVPLNQVSQVWSGKKGSQTNYRLSYQARYIQ
TQPAVTEGEANASATFVVTYN

Specific function: Unknown

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081805, Length=144, Percent_Identity=35.4166666666667, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1790773, Length=146, Percent_Identity=33.5616438356164, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787781, Length=141, Percent_Identity=34.7517730496454, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082421, Length=145, Percent_Identity=31.7241379310345, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 36198; Mature: 36198

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIIASGVPLLLAGGYCASLSAACQMVSGKTIEYSVNVSQASINLDVSDLPIGSLLYSY
CCCCHHCCCCEEEECCHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEHHCCCHHHHHHHH
GGMIITNNERWEIACSGSEPGGFQSIGGSRVGPAGDGKPGDIYSIDRLPGIGYSFQMGEQ
CCEEEECCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCC
DGINFDPLFTAWPSAPVFSGQRAFQAENKKPTIYFWRIADNGGLPPPGEYCLNDYLGDIY
CCCCCCCEEECCCCCCCCCCCHHECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCEE
LGGVQAMRFSVSGLCIQVKSPTCKITDDSKNINVFLGRHNKTAFTGLNSTTAPVPFNINL
ECCCEEEEEEECEEEEEECCCEEEEECCCCCEEEEEECCCCEEEECCCCCCCCCEEEEEE
TNCENVGSVFMQFNATVDSAVAANEVIKIDDQPEGASGLGVQILSAGGSLVPLNQVSQVW
CCCCCCCEEEEEECCCHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCCEEEHHHHHHHH
SGKKGSQTNYRLSYQARYIQTQPAVTEGEANASATFVVTYN
CCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MKKIIASGVPLLLAGGYCASLSAACQMVSGKTIEYSVNVSQASINLDVSDLPIGSLLYSY
CCCCHHCCCCEEEECCHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEHHCCCHHHHHHHH
GGMIITNNERWEIACSGSEPGGFQSIGGSRVGPAGDGKPGDIYSIDRLPGIGYSFQMGEQ
CCEEEECCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCC
DGINFDPLFTAWPSAPVFSGQRAFQAENKKPTIYFWRIADNGGLPPPGEYCLNDYLGDIY
CCCCCCCEEECCCCCCCCCCCHHECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCEE
LGGVQAMRFSVSGLCIQVKSPTCKITDDSKNINVFLGRHNKTAFTGLNSTTAPVPFNINL
ECCCEEEEEEECEEEEEECCCEEEEECCCCCEEEEEECCCCEEEECCCCCCCCCEEEEEE
TNCENVGSVFMQFNATVDSAVAANEVIKIDDQPEGASGLGVQILSAGGSLVPLNQVSQVW
CCCCCCCEEEEEECCCHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCCEEEHHHHHHHH
SGKKGSQTNYRLSYQARYIQTQPAVTEGEANASATFVVTYN
CCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]