Click here to switch to the map view.

The map label for this gene is ybbM [H]

Identifier: 238893457

GI number: 238893457

Start: 1301250

End: 1302032

Strand: Direct

Name: ybbM [H]

Synonym: KP1_1348

Alternate gene names: 238893457

Gene position: 1301250-1302032 (Clockwise)

Preceding gene: 238893456

Following gene: 238893461

Centisome position: 24.79

GC content: 54.79

Gene sequence:

>783_bases
ATGAACGGGCATAACATTACGAACGAATCGCTGGCGCTGTCGATGGTGCTGGTGCTGATCGCTATTCTGGTCAGCTATCG
GGAAAAGCTGGCGCTGGAAAAAGATATTATCTGGAGTATTTGCCGGGCGATCGTGCAGCTGATAATCGTCGGCTATGTGC
TGAAATATATCTTTAACGTCAATCATGCGGTTCTGACGCTGTTGATGGTGCTGTTTATCTGCTTTAACGCGGCGTGGAAT
GCGAAGAAGCGCAGTAAATATATCGACAAAGCTTTTATCTCGTCGTTTATCGCCATCACTACTGGCGCTGGACTAACGCT
GGCGGTACTGGTGTTTTCTGGCTCGATCGCCTTCGTGCCGATGCAGGTGATCCCGATTGCCGGGATGGTGGCCGGGAACG
CCATGGTGGCGGTAGGGCTGTGCTACAACAATATGGGCCAGCGCTTCAGCAGCGAGCAGCAGCAGATTCAGGAGAAGCTG
AGCCTCGGCGCGACGCCGAAGATGGCCTCAGCGCGGCTGATTCGCGAGAGCATTCGCGCGTCATTGATTCCCACCGTCGA
TTCGGCGAAAACGGTCGGTCTGGTGAGCTTGCCTGGGATGATGTCGGGGCTGATTTTTGCCGGTATTGACCCGGTGAAGG
CGATTAAGTACCAGATCATGGTGACCTTTATGCTGCTGTCGACCGCCAGCCTGTCGACGATTATCGCCGGCTATCTGACC
TACCGGAAGTTCTTCAACGCCCGCCATCAGCTGGTGGTGACGCAGCTGAAAAAGCGCCCGTGA

Upstream 100 bases:

>100_bases
GTCGCTGTTCTGTGGGTCACCCACGATCGCAATGAAATTTCGCATGCCGATGAAGTGATTACGCTGCAACCTGCCGGCGG
AAATATGCAGGAGGTACAGC

Downstream 100 bases:

>100_bases
ACGATCCCGGGTTGCGGCGTTCACGCCTTACCCGGGCTACTTAGGCTACGTTCCGCATAGTTCGCGTAGCCCGGATAAGC
GCAGCGCTATCCGGGGAAGG

Product: putative metal resistance transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MNGHNITNESLALSMVLVLIAILVSYREKLALEKDIIWSICRAIVQLIIVGYVLKYIFNVNHAVLTLLMVLFICFNAAWN
AKKRSKYIDKAFISSFIAITTGAGLTLAVLVFSGSIAFVPMQVIPIAGMVAGNAMVAVGLCYNNMGQRFSSEQQQIQEKL
SLGATPKMASARLIRESIRASLIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIAGYLT
YRKFFNARHQLVVTQLKKRP

Sequences:

>Translated_260_residues
MNGHNITNESLALSMVLVLIAILVSYREKLALEKDIIWSICRAIVQLIIVGYVLKYIFNVNHAVLTLLMVLFICFNAAWN
AKKRSKYIDKAFISSFIAITTGAGLTLAVLVFSGSIAFVPMQVIPIAGMVAGNAMVAVGLCYNNMGQRFSSEQQQIQEKL
SLGATPKMASARLIRESIRASLIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIAGYLT
YRKFFNARHQLVVTQLKKRP
>Mature_260_residues
MNGHNITNESLALSMVLVLIAILVSYREKLALEKDIIWSICRAIVQLIIVGYVLKYIFNVNHAVLTLLMVLFICFNAAWN
AKKRSKYIDKAFISSFIAITTGAGLTLAVLVFSGSIAFVPMQVIPIAGMVAGNAMVAVGLCYNNMGQRFSSEQQQIQEKL
SLGATPKMASARLIRESIRASLIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIAGYLT
YRKFFNARHQLVVTQLKKRP

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=259, Percent_Identity=85.7142857142857, Blast_Score=458, Evalue=1e-130,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 28455; Mature: 28455

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]