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The map label for this gene is ycaC [H]

Identifier: 238893329

GI number: 238893329

Start: 1173109

End: 1173750

Strand: Direct

Name: ycaC [H]

Synonym: KP1_1207

Alternate gene names: 238893329

Gene position: 1173109-1173750 (Clockwise)

Preceding gene: 238893327

Following gene: 238893330

Centisome position: 22.35

GC content: 57.01

Gene sequence:

>642_bases
ATGTCTATTCGTGAACTGCTCGATCCCACTAATTCCGCGCTTATCTTTATTGACCATCAGCCGCAAATGTCCTTTGGCGT
GGCGAATATCGATCGCCAGACCCTGAAAAATAACACCGTGGCGCTGGCGAAAGCGGGCAAAATTTTTAATGTACCGGTGA
TTTATACCTCCGTAGAGACCAAAAGCTTTAGCGGCTATATCTGGCCGGAATTATTGGCCGTGCATCCTGACGTCAAGCCG
ATTGAACGTACCTCCATGAACTCCTGGGAAGACGATGCGTTTGTGGCAGCGGTGAAAGCGACCGGCCGTAAAAAGCTGGT
GATCTCCGCTCTGTGGACCGAAGTCTGCCTGACCTTCCCGGCGTTGATGGCGCTGGAGGCGGGCTACGAGGTCTATGTAG
TGACGGATACCTCCGGCGGCACCTCTGTCGACGCCCATGAGCGGTCTATTGACCGGATGGTGCAGGCGGGGGCGGTGCCG
GTGACCTGGCAGCAGGTGCTGCTGGAGTACCAGCGCGACTGGTCGCGCAAAGCGACCTACGATGCGGTAATGGACCTGGT
GCGCGAACACAGCGGCGCCTACGGGATGGGCGTGGATTACGCTTATACCATGGTGCATGGCGCGCCGGAGCGTAAAGCGT
AA

Upstream 100 bases:

>100_bases
GAAATAACTGGCTATACTCACCATGCTTTATCAGTCAGGATCCACACGACGCATTAATCATCATGTCATCTTTTTAACTA
ATTGATTAAGAAGGTATTTA

Downstream 100 bases:

>100_bases
ATCACTCCATCCTTCAGGCTGCTGCGTTGTTGGCTGCGTTTGTCCGTCCCCAGCTACTGAATTTATTCAAGTTCACGGGG
ACGTGCCCGCCTGCCGCTTC

Product: isochorismatase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MSIRELLDPTNSALIFIDHQPQMSFGVANIDRQTLKNNTVALAKAGKIFNVPVIYTSVETKSFSGYIWPELLAVHPDVKP
IERTSMNSWEDDAFVAAVKATGRKKLVISALWTEVCLTFPALMALEAGYEVYVVTDTSGGTSVDAHERSIDRMVQAGAVP
VTWQQVLLEYQRDWSRKATYDAVMDLVREHSGAYGMGVDYAYTMVHGAPERKA

Sequences:

>Translated_213_residues
MSIRELLDPTNSALIFIDHQPQMSFGVANIDRQTLKNNTVALAKAGKIFNVPVIYTSVETKSFSGYIWPELLAVHPDVKP
IERTSMNSWEDDAFVAAVKATGRKKLVISALWTEVCLTFPALMALEAGYEVYVVTDTSGGTSVDAHERSIDRMVQAGAVP
VTWQQVLLEYQRDWSRKATYDAVMDLVREHSGAYGMGVDYAYTMVHGAPERKA
>Mature_212_residues
SIRELLDPTNSALIFIDHQPQMSFGVANIDRQTLKNNTVALAKAGKIFNVPVIYTSVETKSFSGYIWPELLAVHPDVKPI
ERTSMNSWEDDAFVAAVKATGRKKLVISALWTEVCLTFPALMALEAGYEVYVVTDTSGGTSVDAHERSIDRMVQAGAVPV
TWQQVLLEYQRDWSRKATYDAVMDLVREHSGAYGMGVDYAYTMVHGAPERKA

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=169, Percent_Identity=42.603550295858, Blast_Score=137, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 23648; Mature: 23517

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRELLDPTNSALIFIDHQPQMSFGVANIDRQTLKNNTVALAKAGKIFNVPVIYTSVET
CCHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCEEEEECCCEEECCEEEEEECC
KSFSGYIWPELLAVHPDVKPIERTSMNSWEDDAFVAAVKATGRKKLVISALWTEVCLTFP
CCCCCCCCHHHEEECCCCCCCHHCCCCCCCCCCEEEEEECCCCCEEHHHHHHHHHHHHHH
ALMALEAGYEVYVVTDTSGGTSVDAHERSIDRMVQAGAVPVTWQQVLLEYQRDWSRKATY
HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHH
DAVMDLVREHSGAYGMGVDYAYTMVHGAPERKA
HHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure 
SIRELLDPTNSALIFIDHQPQMSFGVANIDRQTLKNNTVALAKAGKIFNVPVIYTSVET
CHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCEEEEECCCEEECCEEEEEECC
KSFSGYIWPELLAVHPDVKPIERTSMNSWEDDAFVAAVKATGRKKLVISALWTEVCLTFP
CCCCCCCCHHHEEECCCCCCCHHCCCCCCCCCCEEEEEECCCCCEEHHHHHHHHHHHHHH
ALMALEAGYEVYVVTDTSGGTSVDAHERSIDRMVQAGAVPVTWQQVLLEYQRDWSRKATY
HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHH
DAVMDLVREHSGAYGMGVDYAYTMVHGAPERKA
HHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]