Click here to switch to the map view.

The map label for this gene is ykgK [H]

Identifier: 238893272

GI number: 238893272

Start: 1113926

End: 1114468

Strand: Direct

Name: ykgK [H]

Synonym: KP1_1145

Alternate gene names: 238893272

Gene position: 1113926-1114468 (Clockwise)

Preceding gene: 238893265

Following gene: 238893273

Centisome position: 21.22

GC content: 40.88

Gene sequence:

>543_bases
ATGGAATATAAAAGCTGTTCCGATAAGTATATTTGGTCTGCCGATGACTCCTATTTCTATAAAGGACTGTCCGAACTGAT
TGTAGACATCGACGAATTAATTTATCTCTCACTGGAGAAAATCAGAAAAGATTTTGTGTTTATCAATCTCAATACGGCTT
CATTAAATGAATTTATCAGGCGCGACAGCGAATGGCTATCCGCGGTAAAGGGGAAACAGGTCGTATTGATTGCGGCCAGG
AAATCAGAGGCCTTAGCGAACTACTGGTATTACAATAGCGATATTCGCGGGGTGGTATATGTTGGTCTGAGTCGCGATAT
TCGAAAAGAGTTGGCCTATGTAATTAATGGCAGGTTTCTCCGCAAAGATATTAAGAAAGATAAAATTACAGATCGGGAAA
TGAAAATTATCCGCATGACCGCCCAGGGCATGCAGCCGAAATCGATCGCCAGAATTGAAAATTGTAGCGTGAAGACAGTG
TATACCCATCGGCGTAATGCTGAGGCCAAACTGTATTCCAAAATATATAAGTTAGTTCAGTAA

Upstream 100 bases:

>100_bases
ATTTATTAAAGGAAACGAATACGCCAGTAAACTTTATAGGCCTGGCAAGCAGTGACGTTGTAAAAATGATTACTTCAAGG
ACTATGAGGTTAAAAACTAT

Downstream 100 bases:

>100_bases
CACCCAAGCAATTCTGTTTTTTAAATGGTTCACCGGGACATCATGTCCTTAATTCAACTCAGGATGAAAAAGCGATGAAA
AAAAAGGTTCTGGCAATAGC

Product: putative regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MEYKSCSDKYIWSADDSYFYKGLSELIVDIDELIYLSLEKIRKDFVFINLNTASLNEFIRRDSEWLSAVKGKQVVLIAAR
KSEALANYWYYNSDIRGVVYVGLSRDIRKELAYVINGRFLRKDIKKDKITDREMKIIRMTAQGMQPKSIARIENCSVKTV
YTHRRNAEAKLYSKIYKLVQ

Sequences:

>Translated_180_residues
MEYKSCSDKYIWSADDSYFYKGLSELIVDIDELIYLSLEKIRKDFVFINLNTASLNEFIRRDSEWLSAVKGKQVVLIAAR
KSEALANYWYYNSDIRGVVYVGLSRDIRKELAYVINGRFLRKDIKKDKITDREMKIIRMTAQGMQPKSIARIENCSVKTV
YTHRRNAEAKLYSKIYKLVQ
>Mature_180_residues
MEYKSCSDKYIWSADDSYFYKGLSELIVDIDELIYLSLEKIRKDFVFINLNTASLNEFIRRDSEWLSAVKGKQVVLIAAR
KSEALANYWYYNSDIRGVVYVGLSRDIRKELAYVINGRFLRKDIKKDKITDREMKIIRMTAQGMQPKSIARIENCSVKTV
YTHRRNAEAKLYSKIYKLVQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI2367106, Length=180, Percent_Identity=90.5555555555556, Blast_Score=327, Evalue=2e-91,
Organism=Escherichia coli, GI87082166, Length=182, Percent_Identity=25.8241758241758, Blast_Score=63, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 21179; Mature: 21179

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYKSCSDKYIWSADDSYFYKGLSELIVDIDELIYLSLEKIRKDFVFINLNTASLNEFIR
CCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHHHH
RDSEWLSAVKGKQVVLIAARKSEALANYWYYNSDIRGVVYVGLSRDIRKELAYVINGRFL
CCHHHHHHHCCCEEEEEEECCCHHHHHHEEECCCCCEEEEECCCHHHHHHHHHHHCCHHH
RKDIKKDKITDREMKIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKLVQ
HHHHHHCCCCHHHHHHHEEHHCCCCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHC
>Mature Secondary Structure
MEYKSCSDKYIWSADDSYFYKGLSELIVDIDELIYLSLEKIRKDFVFINLNTASLNEFIR
CCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHHHH
RDSEWLSAVKGKQVVLIAARKSEALANYWYYNSDIRGVVYVGLSRDIRKELAYVINGRFL
CCHHHHHHHCCCEEEEEEECCCHHHHHHEEECCCCCEEEEECCCHHHHHHHHHHHCCHHH
RKDIKKDKITDREMKIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKLVQ
HHHHHHCCCCHHHHHHHEEHHCCCCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA