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The map label for this gene is deoB [H]

Identifier: 238892970

GI number: 238892970

Start: 777247

End: 778470

Strand: Direct

Name: deoB [H]

Synonym: KP1_0799

Alternate gene names: 238892970

Gene position: 777247-778470 (Clockwise)

Preceding gene: 238892969

Following gene: 238892971

Centisome position: 14.81

GC content: 58.58

Gene sequence:

>1224_bases
ATGAAACGTGCATTTATCATGGTGCTGGACTCCTTTGGGATTGGCGCAACGGAAGACGCAGACCGCTTTGGCGACGTCGG
CGCCGATACGCTGGGCCACATTGCAGAAGCCTGCGCCAAAGGCGAGGCTGACCACGGCCGCAAAGGCCCGCTGAATTTAC
CGAACCTGACCCGTCTGGGTCTGGTGAAAGCGCATGAAGGCTCCACCGGTAAAATTGCCGCGGGTATGGATGGCAATGCC
GAAGTGATTGGCGCCTATGCCTGGGCGCATGAACTTTCTTCCGGTAAAGATACCCCGTCCGGCCACTGGGAAATCGCCGG
CGTGCCGGTGCTGTTTGACTGGGGCTACTTCAGCGACCAGGAAAACAGTTTCCCGCAGGAGCTGCTGGATAAGCTGGTGA
AACGCGCCAACCTGCCGGGCTATCTCGGCAACTGCCACTCCTCCGGGACGGTGATCCTCGATCAGCTCGGCGAAGAGCAT
ATGAAAACCGGGAAACCGATCTTCTATACCTCCGCTGACTCGGTGTTCCAGATCGCCTGTCACGAAGAGACCTTTGGCCT
CGACAAGCTGTATGAACTGTGCGAAATCGCGCGTGAAGAGCTGACCGAAGGCGGCTATAACATTGGTCGCGTGATTGCTC
GTCCTTTCGTGGGCGACAAAGCCGGTAACTTCCAGCGTACCGGTAACCGTCACGACCTGGCGGTAGAGCCGCCGGCGCCG
ACCGTGCTGCAGAAGCTGGTCGACGAGAAAAACGGCCACGTGGTGTCCGTGGGTAAAATCGCCGATATCTACGCCAACTG
CGGTATCACTAAGAAAGTGAAAGCCACCGGGCTGGACGCGCTGTTCGACGCGACCATCAAAGAGATGAAGGAAGCGGGCG
ACGAGACTATCGTCTTCACTAACTTCGTCGATTTTGACTCCTCCTGGGGCCACCGTCGTGACGTCGCTGGCTACGCGGCG
GGTCTGGAGCTGTTCGACCGCCGTCTGCCGGAGCTGATGGAGCTGGTTGGTGAAGACGACATTCTGATCCTCACCGCCGA
CCACGGCTGCGACCCGACCTGGACCGGTACCGACCACACCCGCGAGCATATCCCGGTGCTGGTGTACGGCCCGAAAGTGA
AACCAGGTTCGCTCGGTCACCGTGAAACCTTCGCGGACATCGGCCAGACTATTGCGAAATACTTTGGTACGTCTGACATG
GAATATGGCAAAGCCATGTTCTGA

Upstream 100 bases:

>100_bases
AAAGCCCCGGAAATTACACCGACAGTCTATCGCCGTATCACTGAATAGCGATATACTGATCTGATCGCTTTTTTGCAGCG
CAAGATGTATGGAGAACAAG

Downstream 100 bases:

>100_bases
GGTCATTGCCCGGTGGCGCACAGCGATCCGGGCCTACGGTTTGTAGGCCGGGTAAGGCGTAGCCGCCACCCGGCAAAAAC
AACAATGTAAAAGGAACTGA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MKRAFIMVLDSFGIGATEDADRFGDVGADTLGHIAEACAKGEADHGRKGPLNLPNLTRLGLVKAHEGSTGKIAAGMDGNA
EVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDQENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFVGDKAGNFQRTGNRHDLAVEPPAP
TVLQKLVDEKNGHVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDETIVFTNFVDFDSSWGHRRDVAGYAA
GLELFDRRLPELMELVGEDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTIAKYFGTSDM
EYGKAMF

Sequences:

>Translated_407_residues
MKRAFIMVLDSFGIGATEDADRFGDVGADTLGHIAEACAKGEADHGRKGPLNLPNLTRLGLVKAHEGSTGKIAAGMDGNA
EVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDQENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFVGDKAGNFQRTGNRHDLAVEPPAP
TVLQKLVDEKNGHVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDETIVFTNFVDFDSSWGHRRDVAGYAA
GLELFDRRLPELMELVGEDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTIAKYFGTSDM
EYGKAMF
>Mature_407_residues
MKRAFIMVLDSFGIGATEDADRFGDVGADTLGHIAEACAKGEADHGRKGPLNLPNLTRLGLVKAHEGSTGKIAAGMDGNA
EVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDQENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFVGDKAGNFQRTGNRHDLAVEPPAP
TVLQKLVDEKNGHVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDETIVFTNFVDFDSSWGHRRDVAGYAA
GLELFDRRLPELMELVGEDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTIAKYFGTSDM
EYGKAMF

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=407, Percent_Identity=95.3316953316953, Blast_Score=803, Evalue=0.0,
Organism=Escherichia coli, GI1789781, Length=441, Percent_Identity=28.3446712018141, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 44265; Mature: 44265

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAFIMVLDSFGIGATEDADRFGDVGADTLGHIAEACAKGEADHGRKGPLNLPNLTRLG
CCCEEEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC
LVKAHEGSTGKIAAGMDGNAEVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDQ
EEEECCCCCCEEEECCCCCCEEEEHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCC
ENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCHHHHHCCCCEEEECCCCEEEEEE
HEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFVGDKAGNFQRTGNRHDLAVEPPAP
CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCH
TVLQKLVDEKNGHVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDETIVFT
HHHHHHHHCCCCCEEEECHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEE
NFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMELVGEDDILILTADHGCDPTWTGTDHT
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
REHIPVLVYGPKVKPGSLGHRETFADIGQTIAKYFGTSDMEYGKAMF
HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKRAFIMVLDSFGIGATEDADRFGDVGADTLGHIAEACAKGEADHGRKGPLNLPNLTRLG
CCCEEEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC
LVKAHEGSTGKIAAGMDGNAEVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDQ
EEEECCCCCCEEEECCCCCCEEEEHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCC
ENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCHHHHHCCCCEEEECCCCEEEEEE
HEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFVGDKAGNFQRTGNRHDLAVEPPAP
CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCH
TVLQKLVDEKNGHVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDETIVFT
HHHHHHHHCCCCCEEEECHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEE
NFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMELVGEDDILILTADHGCDPTWTGTDHT
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
REHIPVLVYGPKVKPGSLGHRETFADIGQTIAKYFGTSDMEYGKAMF
HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA