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The map label for this gene is ycdT [H]

Identifier: 238892956

GI number: 238892956

Start: 763611

End: 764657

Strand: Reverse

Name: ycdT [H]

Synonym: KP1_0782

Alternate gene names: 238892956

Gene position: 764657-763611 (Counterclockwise)

Preceding gene: 238892958

Following gene: 238892955

Centisome position: 14.57

GC content: 49.95

Gene sequence:

>1047_bases
ATGACTGCACAAACCTGGCGAGCACACTACGCACAAAAATATCAATATTCCTTACGGCTTTTTTTACTGCTTAATTTCAT
TTCTTCCTCGCTGTCGCTGGTCACCCCCCTATTTACGGTAGTTCGTTTTACGCTGCCCTGCGCCCTGATCGTCGTCTGCA
GCGGGCTGCTGCTGCTCTGGCACTGGAAATGGCCGCAATCGAAAATAAATATTCCCACTATCTCGTTGTTATTTGGCATG
CTATGGGCATGGCACGTAGTGACAAAAGCGATGCTATTGACACCGCCGCATTTTAACTATCTGGTGATCGCCCTATTAAG
CATTCTGTTTATCGGCACCATCGCTTTTTCCAATAATATCACTGCCTTTACCCTCCACTCTTTACCAACTTTCCTTGCCT
GCCTGATAATGGCGGAGGGGGAACAATGGTTGCGTATGACTTACTGCTTTATGCTGCCTATAGCCGGTATTACCCTGCAA
AATATTATCCAGAAGCGCAGCGATGCCTTTACGCAGGGTTTAATGGATAAACTGATGCATGAACGCAATACGCTCAACGA
TCTCAGTATGCTCGATCCCCTGACCGGTTTGTATAATCGCCGCGGACTGCAGAACCGCCTCGATACCCTGCTGGCGCTGG
ACGGCGACAACCACTACGTGCTGCTCCTCGATATCGATCACTTCAAGGCCTATAACGATCACTATGGTCATATGATGGGT
GACCAGGCGCTTATTCGCGTCTCTGCTGCCATTCGCAACGCTGTACGCTCACGCGATATTGTCGCCCGCTTTGGTGGAGA
GGAGTTTATGGTGCTGCTGACCAATAGCAGCGAAGAAACGGCCTGGAAGACAGCCGAACGTATACGTCAGCGGGTCTATG
ACCTGAAGATCCCGCATATGTTTAATGAAAGCGTCGCCACCAACGTCACCATCAGTATTGGCCTGACGCCGCTCATTAAT
GACAACATTGAACAAGCGCTGGCGCGTGCCGACGGCGCACTCTATGAGGCCAAAAATAAAGGCCGCAACATTATTCTTGC
CAGTTGA

Upstream 100 bases:

>100_bases
CTTATTTTGCAAATAACCTTTTTTTGCACATTGTTATCAGACTCTTCATTTTTGGCTTTCATCATTTTGAAATTTAACGA
CTAATAATGATTCTTCCGAT

Downstream 100 bases:

>100_bases
CCTGCGCGCGCTGCGACATCGCGGCGCCGATAAAAGCCTTGCCATGCCGCCTGCAAGCAACTAATATCAGTAATCATTAT
CATTTAGATTTGTATCTGGA

Product: putative transmembrane protein

Products: NA

Alternate protein names: Stalked cell differentiation-controlling protein; Diguanylate cyclase; DGC; Diguanylate kinase [H]

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MTAQTWRAHYAQKYQYSLRLFLLLNFISSSLSLVTPLFTVVRFTLPCALIVVCSGLLLLWHWKWPQSKINIPTISLLFGM
LWAWHVVTKAMLLTPPHFNYLVIALLSILFIGTIAFSNNITAFTLHSLPTFLACLIMAEGEQWLRMTYCFMLPIAGITLQ
NIIQKRSDAFTQGLMDKLMHERNTLNDLSMLDPLTGLYNRRGLQNRLDTLLALDGDNHYVLLLDIDHFKAYNDHYGHMMG
DQALIRVSAAIRNAVRSRDIVARFGGEEFMVLLTNSSEETAWKTAERIRQRVYDLKIPHMFNESVATNVTISIGLTPLIN
DNIEQALARADGALYEAKNKGRNIILAS

Sequences:

>Translated_348_residues
MTAQTWRAHYAQKYQYSLRLFLLLNFISSSLSLVTPLFTVVRFTLPCALIVVCSGLLLLWHWKWPQSKINIPTISLLFGM
LWAWHVVTKAMLLTPPHFNYLVIALLSILFIGTIAFSNNITAFTLHSLPTFLACLIMAEGEQWLRMTYCFMLPIAGITLQ
NIIQKRSDAFTQGLMDKLMHERNTLNDLSMLDPLTGLYNRRGLQNRLDTLLALDGDNHYVLLLDIDHFKAYNDHYGHMMG
DQALIRVSAAIRNAVRSRDIVARFGGEEFMVLLTNSSEETAWKTAERIRQRVYDLKIPHMFNESVATNVTISIGLTPLIN
DNIEQALARADGALYEAKNKGRNIILAS
>Mature_347_residues
TAQTWRAHYAQKYQYSLRLFLLLNFISSSLSLVTPLFTVVRFTLPCALIVVCSGLLLLWHWKWPQSKINIPTISLLFGML
WAWHVVTKAMLLTPPHFNYLVIALLSILFIGTIAFSNNITAFTLHSLPTFLACLIMAEGEQWLRMTYCFMLPIAGITLQN
IIQKRSDAFTQGLMDKLMHERNTLNDLSMLDPLTGLYNRRGLQNRLDTLLALDGDNHYVLLLDIDHFKAYNDHYGHMMGD
QALIRVSAAIRNAVRSRDIVARFGGEEFMVLLTNSSEETAWKTAERIRQRVYDLKIPHMFNESVATNVTISIGLTPLIND
NIEQALARADGALYEAKNKGRNIILAS

Specific function: Catalyzes the condensation of two GTP molecules to the cyclic dinucleotide di-GMP (c-di-GMP), which acts as a secondary messenger [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm. Note=Phosphorylated PleD localizes to the differentiating pole [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 response regulatory domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=159, Percent_Identity=41.5094339622642, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=34.1040462427746, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=41.2121212121212, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87081881, Length=161, Percent_Identity=37.888198757764, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI87082007, Length=163, Percent_Identity=35.5828220858896, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI1788085, Length=176, Percent_Identity=34.6590909090909, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787541, Length=170, Percent_Identity=35.8823529411765, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787816, Length=157, Percent_Identity=36.3057324840764, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788381, Length=158, Percent_Identity=37.9746835443038, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1787802, Length=181, Percent_Identity=32.5966850828729, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081977, Length=221, Percent_Identity=29.8642533936652, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081974, Length=152, Percent_Identity=31.5789473684211, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788956, Length=152, Percent_Identity=30.2631578947368, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787056, Length=157, Percent_Identity=30.5732484076433, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR011006
- InterPro:   IPR000160
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00990 GGDEF; PF00072 Response_reg [H]

EC number: =2.7.7.65 [H]

Molecular weight: Translated: 39591; Mature: 39460

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAQTWRAHYAQKYQYSLRLFLLLNFISSSLSLVTPLFTVVRFTLPCALIVVCSGLLLLW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
HWKWPQSKINIPTISLLFGMLWAWHVVTKAMLLTPPHFNYLVIALLSILFIGTIAFSNNI
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
TAFTLHSLPTFLACLIMAEGEQWLRMTYCFMLPIAGITLQNIIQKRSDAFTQGLMDKLMH
CEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ERNTLNDLSMLDPLTGLYNRRGLQNRLDTLLALDGDNHYVLLLDIDHFKAYNDHYGHMMG
HHCCCHHHHHHHHHHHHHHCCCHHHHHHHEEEECCCCEEEEEEEEHHHHHCCCCCCCCCC
DQALIRVSAAIRNAVRSRDIVARFGGEEFMVLLTNSSEETAWKTAERIRQRVYDLKIPHM
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCH
FNESVATNVTISIGLTPLINDNIEQALARADGALYEAKNKGRNIILAS
HCCCHHCEEEEEECCCHHCCCCHHHHHHHHCCHHEECCCCCCEEEEEC
>Mature Secondary Structure 
TAQTWRAHYAQKYQYSLRLFLLLNFISSSLSLVTPLFTVVRFTLPCALIVVCSGLLLLW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
HWKWPQSKINIPTISLLFGMLWAWHVVTKAMLLTPPHFNYLVIALLSILFIGTIAFSNNI
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
TAFTLHSLPTFLACLIMAEGEQWLRMTYCFMLPIAGITLQNIIQKRSDAFTQGLMDKLMH
CEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ERNTLNDLSMLDPLTGLYNRRGLQNRLDTLLALDGDNHYVLLLDIDHFKAYNDHYGHMMG
HHCCCHHHHHHHHHHHHHHCCCHHHHHHHEEEECCCCEEEEEEEEHHHHHCCCCCCCCCC
DQALIRVSAAIRNAVRSRDIVARFGGEEFMVLLTNSSEETAWKTAERIRQRVYDLKIPHM
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCH
FNESVATNVTISIGLTPLINDNIEQALARADGALYEAKNKGRNIILAS
HCCCHHCEEEEEECCCHHCCCCHHHHHHHHCCHHEECCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA