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The map label for this gene is tdcF [C]

Identifier: 238892927

GI number: 238892927

Start: 736210

End: 736602

Strand: Direct

Name: tdcF [C]

Synonym: KP1_0752

Alternate gene names: 238892927

Gene position: 736210-736602 (Clockwise)

Preceding gene: 238892926

Following gene: 238892928

Centisome position: 14.03

GC content: 56.74

Gene sequence:

>393_bases
ATGAGTATCAAGCGTTATGGCGTAGAAGGTGGTACCGGTACCGGCGGGCAGCACCTGCCGTTCGCGCGGGCGGTGGAAGC
GGGAGGCTGGCTGTACGTTTCCGGCCAGACGCCGATGAAAAATGGCGAAGTCGTGGAAGGCGGGATTGTCGACCAGTCGC
GTCTGGCGATTCAGAACTGCGTAGATATCATGACCGAAGCGGGCTACACCCTGGCCGACGTGGTGCATGTTAAAGTGATC
CTCACCGATGCGCGCTATTTTCAGTCGTTCAATAAGGTATTTCGCGAGTTCTTTGGCGACAACCCGCCTGCCCGCATCTG
CTGCGTAGCGGACCTGGTGGTGGATTGTAAAGTCGAAGTGGATGTGACCTGTTTTAACGCTGCGCGACAATAA

Upstream 100 bases:

>100_bases
GCGGTGATGGTCAACGGCGTGATGAGCTACGGCAGTGATAAGAAAATTACCGGACGGGCAGGGCGTTTCCTGCGTCGTCG
GATGGACTAAGGAGTTGAGT

Downstream 100 bases:

>100_bases
CGCTCGAAACCTAAAATAAATCCCTCCCTTTGCGGGAGGGAGCATCAAAAAAGTGTGATATCGGCACCAGAGTGAATAAA
TAAATCGGTGCCACTGGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MSIKRYGVEGGTGTGGQHLPFARAVEAGGWLYVSGQTPMKNGEVVEGGIVDQSRLAIQNCVDIMTEAGYTLADVVHVKVI
LTDARYFQSFNKVFREFFGDNPPARICCVADLVVDCKVEVDVTCFNAARQ

Sequences:

>Translated_130_residues
MSIKRYGVEGGTGTGGQHLPFARAVEAGGWLYVSGQTPMKNGEVVEGGIVDQSRLAIQNCVDIMTEAGYTLADVVHVKVI
LTDARYFQSFNKVFREFFGDNPPARICCVADLVVDCKVEVDVTCFNAARQ
>Mature_129_residues
SIKRYGVEGGTGTGGQHLPFARAVEAGGWLYVSGQTPMKNGEVVEGGIVDQSRLAIQNCVDIMTEAGYTLADVVHVKVIL
TDARYFQSFNKVFREFFGDNPPARICCVADLVVDCKVEVDVTCFNAARQ

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=109, Percent_Identity=30.2752293577982, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI87082213, Length=115, Percent_Identity=31.304347826087, Blast_Score=68, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322138, Length=125, Percent_Identity=31.2, Blast_Score=71, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6320899, Length=106, Percent_Identity=30.188679245283, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14136; Mature: 14005

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKRYGVEGGTGTGGQHLPFARAVEAGGWLYVSGQTPMKNGEVVEGGIVDQSRLAIQNC
CCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCEEECCCCCHHHHHHHHH
VDIMTEAGYTLADVVHVKVILTDARYFQSFNKVFREFFGDNPPARICCVADLVVDCKVEV
HHHHHHCCCHHHHHEEEEEEEEHHHHHHHHHHHHHHHHCCCCCHHEEEEEEHEEECEEEE
DVTCFNAARQ
EEEECCCCCC
>Mature Secondary Structure 
SIKRYGVEGGTGTGGQHLPFARAVEAGGWLYVSGQTPMKNGEVVEGGIVDQSRLAIQNC
CCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCEEECCCCCHHHHHHHHH
VDIMTEAGYTLADVVHVKVILTDARYFQSFNKVFREFFGDNPPARICCVADLVVDCKVEV
HHHHHHCCCHHHHHEEEEEEEEHHHHHHHHHHHHHHHHCCCCCHHEEEEEEHEEECEEEE
DVTCFNAARQ
EEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]