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The map label for this gene is yjiR [H]

Identifier: 238892889

GI number: 238892889

Start: 700348

End: 701760

Strand: Reverse

Name: yjiR [H]

Synonym: KP1_0709

Alternate gene names: 238892889

Gene position: 701760-700348 (Counterclockwise)

Preceding gene: 238892894

Following gene: 238892886

Centisome position: 13.37

GC content: 62.21

Gene sequence:

>1413_bases
ATGACCCGCTACCAACATCTCGCTACGCTGCTGGCCGAACGCATCGAACAGGGCCTGTATCGCCATGGCGAAAAGCTGCC
GTCGGTGCGCAGCCTGAGCCAGGAGCACGGCGTCAGCATCAGCACTGTCCAGCAGGCCTATCAGCTGCTTGAGCAGCAGC
AGATGATTGTGCCGCAGCCGCGATCGGGCTATTTCGTCGCCCCGCGCAAAGCCCAGCCGCCGGTGCCGCCGATGTCGCGT
CCGGTCCAGCGCCCGGTGGAGATCACCCAGTGGGATCAGGTGCTGACCATGCTTGACGCCCGCTACGATAAATCGATCAT
CCCCTTCGGCGGTGGCTCGCCGGACGTGACGCAGCCAAGCCTGAAGCCCATCTGGCGTGAACTGAGCCGGGCTATCCAGC
ACAACCTCACTGAGGTGTTGAACTATGACGAGCTGGCCGGGCGTCGCGAGCTACGGGAGCAGATCGCCCGCCTGATGCTC
GACGGCGGATCGGTGGTAACTGCCGACGATCTGGTGCTCACCAGCGGCTGCCACAGCGCGCTGTCGCTGGCCCTGCTGTC
GGTGTGTCAGCCAGGGGACATCATCGCCGTTGAATCCCCCTGCTACTACGGCACCATGCAGATGCTGCGCGGGCTGGGAT
TAAAGACCATTGAGATCCCCACCGATCCGGAAACCGGGATCAGCATCGAGGCCCTGGAGCTGGCGCTGGATCAGTGGCCG
ATCAAAGGGGTGATCCTCGTGCCAAACTGCAATAACCCGCTGGGCTTTATCATGCCGGACGCCCGCAAGCGCGCGGTGCT
GAACCTTGCCCAACGCTACGATATCGTTATTTTCGAGGATGATATTTACGGCGAGCTGGCCACCGAATACCCGCGCCCGC
GCACGATCCACTCCTGGGATATCGACGGCCGGGTGATGCTCTGCAGCTCCTTTACCAAAACCATCGCCCCCGGGCTGCGT
ATCGGCTGGATCGCCCCCGGGCGCTACTACGACAAGCTGCTACAGATGAAGTACGCCGCCAGCGGGACCAACGTCCCTTC
CACTCAGCTGGCGGCCTGTAATTTTATTCGCGAAGGCCACTACCACCGCCACGTGCGGCGGATGCGGCAGATCTATCAGC
GCAATATCGAGATCTACACCTGCTGGCTGCGGGAATTTTTCCCCTGCGGGATCTGCGTCACCCGGCCGAAGGGCGGTTTT
ATGCTGTGGGTTGAGCTCCCGGAGCAGGTAGATATGGTCTGCGTCGCCAAGCAGCTGTGCCGGCTGAAGATCCAGGTTGC
GCCGGGCTCGCTGTTTTCGGCAGCGGGCAAGTATCGCAACTGCGTCAGGATCAACTGCGCCCTGCCGCCGACCGAGAAAC
ATAAAGCGGTGATGGTGAAGCTGGGAGAAGCGGTGAAGGTGGCGATGGAGTGA

Upstream 100 bases:

>100_bases
TCTTTAACATACAGATTAGCTAAAACGTACACCAGAGCCCAATTTTTACGCCAATCTGTACTGGTTATTCCATCTGTATG
GCGGCAATTAAGGATACAGT

Downstream 100 bases:

>100_bases
ATTTAACCTGTTCTCCCCGGTGGCGCTGCGCTTACCGGGGCTACGGGTGATCTAACGTCTGCGAAGCAGCTTCACTGATC
AAAAAACACCATCCCCTTAT

Product: putative aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MTRYQHLATLLAERIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQLLEQQQMIVPQPRSGYFVAPRKAQPPVPPMSR
PVQRPVEITQWDQVLTMLDARYDKSIIPFGGGSPDVTQPSLKPIWRELSRAIQHNLTEVLNYDELAGRRELREQIARLML
DGGSVVTADDLVLTSGCHSALSLALLSVCQPGDIIAVESPCYYGTMQMLRGLGLKTIEIPTDPETGISIEALELALDQWP
IKGVILVPNCNNPLGFIMPDARKRAVLNLAQRYDIVIFEDDIYGELATEYPRPRTIHSWDIDGRVMLCSSFTKTIAPGLR
IGWIAPGRYYDKLLQMKYAASGTNVPSTQLAACNFIREGHYHRHVRRMRQIYQRNIEIYTCWLREFFPCGICVTRPKGGF
MLWVELPEQVDMVCVAKQLCRLKIQVAPGSLFSAAGKYRNCVRINCALPPTEKHKAVMVKLGEAVKVAME

Sequences:

>Translated_470_residues
MTRYQHLATLLAERIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQLLEQQQMIVPQPRSGYFVAPRKAQPPVPPMSR
PVQRPVEITQWDQVLTMLDARYDKSIIPFGGGSPDVTQPSLKPIWRELSRAIQHNLTEVLNYDELAGRRELREQIARLML
DGGSVVTADDLVLTSGCHSALSLALLSVCQPGDIIAVESPCYYGTMQMLRGLGLKTIEIPTDPETGISIEALELALDQWP
IKGVILVPNCNNPLGFIMPDARKRAVLNLAQRYDIVIFEDDIYGELATEYPRPRTIHSWDIDGRVMLCSSFTKTIAPGLR
IGWIAPGRYYDKLLQMKYAASGTNVPSTQLAACNFIREGHYHRHVRRMRQIYQRNIEIYTCWLREFFPCGICVTRPKGGF
MLWVELPEQVDMVCVAKQLCRLKIQVAPGSLFSAAGKYRNCVRINCALPPTEKHKAVMVKLGEAVKVAME
>Mature_469_residues
TRYQHLATLLAERIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQLLEQQQMIVPQPRSGYFVAPRKAQPPVPPMSRP
VQRPVEITQWDQVLTMLDARYDKSIIPFGGGSPDVTQPSLKPIWRELSRAIQHNLTEVLNYDELAGRRELREQIARLMLD
GGSVVTADDLVLTSGCHSALSLALLSVCQPGDIIAVESPCYYGTMQMLRGLGLKTIEIPTDPETGISIEALELALDQWPI
KGVILVPNCNNPLGFIMPDARKRAVLNLAQRYDIVIFEDDIYGELATEYPRPRTIHSWDIDGRVMLCSSFTKTIAPGLRI
GWIAPGRYYDKLLQMKYAASGTNVPSTQLAACNFIREGHYHRHVRRMRQIYQRNIEIYTCWLREFFPCGICVTRPKGGFM
LWVELPEQVDMVCVAKQLCRLKIQVAPGSLFSAAGKYRNCVRINCALPPTEKHKAVMVKLGEAVKVAME

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=375, Percent_Identity=28.5333333333333, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI33469970, Length=375, Percent_Identity=28.5333333333333, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI4507369, Length=230, Percent_Identity=25.6521739130435, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1790797, Length=470, Percent_Identity=79.5744680851064, Blast_Score=821, Evalue=0.0,
Organism=Escherichia coli, GI1787710, Length=471, Percent_Identity=34.8195329087049, Blast_Score=298, Evalue=6e-82,
Organism=Caenorhabditis elegans, GI17567663, Length=317, Percent_Identity=26.1829652996845, Blast_Score=83, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6321000, Length=371, Percent_Identity=24.2587601078167, Blast_Score=86, Evalue=9e-18,
Organism=Saccharomyces cerevisiae, GI6321236, Length=228, Percent_Identity=29.3859649122807, Blast_Score=85, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6321929, Length=393, Percent_Identity=23.1552162849873, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21356535, Length=363, Percent_Identity=23.9669421487603, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI18859735, Length=266, Percent_Identity=24.812030075188, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52957; Mature: 52826

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRYQHLATLLAERIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQLLEQQQMIVPQP
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
RSGYFVAPRKAQPPVPPMSRPVQRPVEITQWDQVLTMLDARYDKSIIPFGGGSPDVTQPS
CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCC
LKPIWRELSRAIQHNLTEVLNYDELAGRRELREQIARLMLDGGSVVTADDLVLTSGCHSA
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCHHHH
LSLALLSVCQPGDIIAVESPCYYGTMQMLRGLGLKTIEIPTDPETGISIEALELALDQWP
HHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCC
IKGVILVPNCNNPLGFIMPDARKRAVLNLAQRYDIVIFEDDIYGELATEYPRPRTIHSWD
CCCEEEECCCCCCCEEECCCHHHHHHHHHHHHCCEEEEECCCCHHHHHCCCCCCCEEEEC
IDGRVMLCSSFTKTIAPGLRIGWIAPGRYYDKLLQMKYAASGTNVPSTQLAACNFIREGH
CCCEEEEEHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCH
YHRHVRRMRQIYQRNIEIYTCWLREFFPCGICVTRPKGGFMLWVELPEQVDMVCVAKQLC
HHHHHHHHHHHHHCCCEEEEEEHHHHCCCCEEEECCCCCEEEEEECCHHHHHHHHHHHHH
RLKIQVAPGSLFSAAGKYRNCVRINCALPPTEKHKAVMVKLGEAVKVAME
HEEEEECCCHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCCHHEEECC
>Mature Secondary Structure 
TRYQHLATLLAERIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQLLEQQQMIVPQP
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
RSGYFVAPRKAQPPVPPMSRPVQRPVEITQWDQVLTMLDARYDKSIIPFGGGSPDVTQPS
CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCC
LKPIWRELSRAIQHNLTEVLNYDELAGRRELREQIARLMLDGGSVVTADDLVLTSGCHSA
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCHHHH
LSLALLSVCQPGDIIAVESPCYYGTMQMLRGLGLKTIEIPTDPETGISIEALELALDQWP
HHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCC
IKGVILVPNCNNPLGFIMPDARKRAVLNLAQRYDIVIFEDDIYGELATEYPRPRTIHSWD
CCCEEEECCCCCCCEEECCCHHHHHHHHHHHHCCEEEEECCCCHHHHHCCCCCCCEEEEC
IDGRVMLCSSFTKTIAPGLRIGWIAPGRYYDKLLQMKYAASGTNVPSTQLAACNFIREGH
CCCEEEEEHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCH
YHRHVRRMRQIYQRNIEIYTCWLREFFPCGICVTRPKGGFMLWVELPEQVDMVCVAKQLC
HHHHHHHHHHHHHCCCEEEEEEHHHHCCCCEEEECCCCCEEEEEECCHHHHHHHHHHHHH
RLKIQVAPGSLFSAAGKYRNCVRINCALPPTEKHKAVMVKLGEAVKVAME
HEEEEECCCHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCCHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]