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The map label for this gene is yrbE [H]

Identifier: 238892796

GI number: 238892796

Start: 594627

End: 595643

Strand: Reverse

Name: yrbE [H]

Synonym: KP1_0604

Alternate gene names: 238892796

Gene position: 595643-594627 (Counterclockwise)

Preceding gene: 238892797

Following gene: 238892789

Centisome position: 11.35

GC content: 60.67

Gene sequence:

>1017_bases
ATGAACAAAATCAGAGCCGCCGTGGTCGGCGCAGGTATCTACGGCAAACACCATATGAACGCGTACCGCCATAACCCGGA
CACGGTGCTGGTCGCCATCTGCGAAACAGATGAGGAACGCTGTGACGACCTTGCCATGGCGTACGGCGTGATGGGCTATA
CCCGGCTGGACGTTCTTCTGCAGGAGGAAGCCATCGACGTGGTCTCGGTGGCGACGCCGGATCCGTACCACACCGAATCC
ATCCTCACCGCCCTGCGCCACGGTAAACATGTGCTGGCAGAAAAACCGCTCGCCACCTCGGTACGCGAGTGTGAGCTTAT
CGTGGAGATGGCGCAGCAGCGGGACCTGCTGGTCGGCGTCGATTTCCACAAGCGCTGGGACCCGGCGGTGATGCGCATTA
AGGCTGAACTGGAGAGGCCGGAAGCCGGGCGCATCCTGCGCGGGCATATCAGTATGGACGACGTGATAACGGTCCCGACG
GCGTGGCTGGACTGGGCGGGCGCAAGCTCCCCGGTATGGTTCCTCGGCTCCCACTGCTTCGACCTGGTGCGCCACCTCTC
CGGCCAGGAAGTGGTGTCGGTGTACGCCGTCGGACAGAAGCGGCTGATGGTCGAATGCGGCCTCGACACCTTTGACAGCG
TGCAAAGCCTGCTGACGATGGGCGACGGCAGTTCGTGGGTGGTCGAGAACTCGTGGGTGCTGCCGGAAGGCTTTCCGAAA
GACAACGACGGGCGCATTGATATTCTCTGCGAGGCAACCTATATCCGCAGTTCCTCGCAGCATCGGGGACTGGAAATTAC
CACCCCGGACAAGACGCTCACGCCCAACAGCTACTTCATCAACTACCGCAACGGTGTCGCCAGCGGCTTTGGTATCGACC
CCATCAATGACTTTGTGCGGGCGGTCAGGAACAGGTCACCGTACCCGGTCACCGCAGTTGACGGGCTGGCGGTAAGCCGG
ATCTGCGAGGCGGTGCATCAGAGTCTCGAAAGTCAAAAACCAGTGTCATTAAAATAG

Upstream 100 bases:

>100_bases
AAAGGTGTACCCGCCTTTCTGCTGTCGAGACAACTGACCGGACCGCTGGCCGTCATCATCGGCTGGCTGTTTTCCCTGGG
CTTATTCTGAGGACTCAACG

Downstream 100 bases:

>100_bases
TCGGCCAGCAGGGATGCTGGTATCCGCAAGCCCGTTGACTCTGTATTCCCTAAAGAATGCCGCCATTTGTTATCCTTAAT
TCAGCATTCATCGTTAACGC

Product: putative dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICETDEERCDDLAMAYGVMGYTRLDVLLQEEAIDVVSVATPDPYHTES
ILTALRHGKHVLAEKPLATSVRECELIVEMAQQRDLLVGVDFHKRWDPAVMRIKAELERPEAGRILRGHISMDDVITVPT
AWLDWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLLTMGDGSSWVVENSWVLPEGFPK
DNDGRIDILCEATYIRSSSQHRGLEITTPDKTLTPNSYFINYRNGVASGFGIDPINDFVRAVRNRSPYPVTAVDGLAVSR
ICEAVHQSLESQKPVSLK

Sequences:

>Translated_338_residues
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICETDEERCDDLAMAYGVMGYTRLDVLLQEEAIDVVSVATPDPYHTES
ILTALRHGKHVLAEKPLATSVRECELIVEMAQQRDLLVGVDFHKRWDPAVMRIKAELERPEAGRILRGHISMDDVITVPT
AWLDWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLLTMGDGSSWVVENSWVLPEGFPK
DNDGRIDILCEATYIRSSSQHRGLEITTPDKTLTPNSYFINYRNGVASGFGIDPINDFVRAVRNRSPYPVTAVDGLAVSR
ICEAVHQSLESQKPVSLK
>Mature_338_residues
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICETDEERCDDLAMAYGVMGYTRLDVLLQEEAIDVVSVATPDPYHTES
ILTALRHGKHVLAEKPLATSVRECELIVEMAQQRDLLVGVDFHKRWDPAVMRIKAELERPEAGRILRGHISMDDVITVPT
AWLDWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLLTMGDGSSWVVENSWVLPEGFPK
DNDGRIDILCEATYIRSSSQHRGLEITTPDKTLTPNSYFINYRNGVASGFGIDPINDFVRAVRNRSPYPVTAVDGLAVSR
ICEAVHQSLESQKPVSLK

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI1787574, Length=144, Percent_Identity=29.8611111111111, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37517; Mature: 37517

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICETDEERCDDLAMAYGVMGYTRLDVLL
CCCCEEEEEECCCCCHHHCHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
QEEAIDVVSVATPDPYHTESILTALRHGKHVLAEKPLATSVRECELIVEMAQQRDLLVGV
HHHCCCEEEECCCCCCCHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEE
DFHKRWDPAVMRIKAELERPEAGRILRGHISMDDVITVPTAWLDWAGASSPVWFLGSHCF
CCCCCCCHHHHEEEHHCCCCCCCCEEEECCCCCCEEECCHHHHHCCCCCCCHHHHHHHHH
DLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLLTMGDGSSWVVENSWVLPEGFPK
HHHHHCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHCCCCCCEEEECCEECCCCCCC
DNDGRIDILCEATYIRSSSQHRGLEITTPDKTLTPNSYFINYRNGVASGFGIDPINDFVR
CCCCCEEEEEEEHHHCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHH
AVRNRSPYPVTAVDGLAVSRICEAVHQSLESQKPVSLK
HHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICETDEERCDDLAMAYGVMGYTRLDVLL
CCCCEEEEEECCCCCHHHCHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
QEEAIDVVSVATPDPYHTESILTALRHGKHVLAEKPLATSVRECELIVEMAQQRDLLVGV
HHHCCCEEEECCCCCCCHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEE
DFHKRWDPAVMRIKAELERPEAGRILRGHISMDDVITVPTAWLDWAGASSPVWFLGSHCF
CCCCCCCHHHHEEEHHCCCCCCCCEEEECCCCCCEEECCHHHHHCCCCCCCHHHHHHHHH
DLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLLTMGDGSSWVVENSWVLPEGFPK
HHHHHCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHCCCCCCEEEECCEECCCCCCC
DNDGRIDILCEATYIRSSSQHRGLEITTPDKTLTPNSYFINYRNGVASGFGIDPINDFVR
CCCCCEEEEEEEHHHCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHH
AVRNRSPYPVTAVDGLAVSRICEAVHQSLESQKPVSLK
HHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]