Click here to switch to the map view.

The map label for this gene is yjgD [H]

Identifier: 238892744

GI number: 238892744

Start: 531995

End: 532417

Strand: Direct

Name: yjgD [H]

Synonym: KP1_0540

Alternate gene names: 238892744

Gene position: 531995-532417 (Clockwise)

Preceding gene: 238892742

Following gene: 238892745

Centisome position: 10.14

GC content: 53.9

Gene sequence:

>423_bases
ATGGCAAACCCGGAACACCTGGAAGAACAGCGTGAAGAGACGCGTCTGATTATCGAAGAGCTGCTGGAAGATGGCAGCGA
TCCGGACGCACTGTACACGATTGAGCATCACCTCTCTGCAGACGATTTCGAAACCCTGGAGAAAGTGGCGGTTGAAGCGT
TCAAGCTGGGCTACGAAGTGACCGAGCCCGAAGAGCTGGAAGTGGAAGAGGGTGACATGGTCATCTGCTGCGATATTCTG
AGCGAATGCGCGCTGAACGCAGATCTGATCGATGCCCAGGTGGAACAGCTGATGACGCTGGCAGAAAAATATGACGTCGA
GTATGACGGTTGGGGCACCTATTATGAGGACCCGAACGGTGAAGACGGCGACGACGATGACGAAGAGTATGTCGATGAAG
ACGACGATGGTGTTCGCCACTAA

Upstream 100 bases:

>100_bases
ATTTGCAAGTCTGTGATCGAAATCTTTCACTGAGAAGTGGAGGCAATGACGGCGGTATGTGACAATAGGGATAACTGCCG
CACATTATGAGGAACGAGCC

Downstream 100 bases:

>100_bases
GTCGCAAATGTCGTAGATGGATACGGCGGCGCCTGCCGCCGTATAGCAAGGAACCTCCATGGATTACCCGCAGATTCTTT
CCCCGATTATCAACTTCCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MANPEHLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDFETLEKVAVEAFKLGYEVTEPEELEVEEGDMVICCDIL
SECALNADLIDAQVEQLMTLAEKYDVEYDGWGTYYEDPNGEDGDDDDEEYVDEDDDGVRH

Sequences:

>Translated_140_residues
MANPEHLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDFETLEKVAVEAFKLGYEVTEPEELEVEEGDMVICCDIL
SECALNADLIDAQVEQLMTLAEKYDVEYDGWGTYYEDPNGEDGDDDDEEYVDEDDDGVRH
>Mature_139_residues
ANPEHLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDFETLEKVAVEAFKLGYEVTEPEELEVEEGDMVICCDILS
ECALNADLIDAQVEQLMTLAEKYDVEYDGWGTYYEDPNGEDGDDDDEEYVDEDDDGVRH

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome [H]

COG id: COG3076

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraB family [H]

Homologues:

Organism=Escherichia coli, GI1790704, Length=120, Percent_Identity=93.3333333333333, Blast_Score=226, Evalue=3e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009671
- InterPro:   IPR016716 [H]

Pfam domain/function: PF06877 DUF1260 [H]

EC number: NA

Molecular weight: Translated: 16012; Mature: 15881

Theoretical pI: Translated: 3.45; Mature: 3.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANPEHLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDFETLEKVAVEAFKLGYEV
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCHHHHHHHHHHHHHHHCCCC
TEPEELEVEEGDMVICCDILSECALNADLIDAQVEQLMTLAEKYDVEYDGWGTYYEDPNG
CCCCCCEECCCCEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
EDGDDDDEEYVDEDDDGVRH
CCCCCCCHHHCCCCCCCCCC
>Mature Secondary Structure 
ANPEHLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDFETLEKVAVEAFKLGYEV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCHHHHHHHHHHHHHHHCCCC
TEPEELEVEEGDMVICCDILSECALNADLIDAQVEQLMTLAEKYDVEYDGWGTYYEDPNG
CCCCCCEECCCCEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
EDGDDDDEEYVDEDDDGVRH
CCCCCCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]