Click here to switch to the map view.

The map label for this gene is ytfM [H]

Identifier: 238892699

GI number: 238892699

Start: 483870

End: 485603

Strand: Direct

Name: ytfM [H]

Synonym: KP1_0490

Alternate gene names: 238892699

Gene position: 483870-485603 (Clockwise)

Preceding gene: 238892695

Following gene: 238892700

Centisome position: 9.22

GC content: 59.52

Gene sequence:

>1734_bases
GTGCTAAAAATCCGCCAGTTATGTGTCACCAGCCTTTTGCTGGTCAGCGGGGTCGCCAGCGCAGCGAATGTGCGTTTGCA
GGTTGAGGGATTATCCGGGGAGCTGGAGAAAAACGTTCGCGCCCAGCTTTCCACCATCCAGAGCGATGAAGTCACGCCGG
ATCGTCGCTTTCGCGCGCGCGTCGATGACGCCATTCGCGAAGGTCTGAAAGCGCTGGGTTATTACGAGCCGACGATTGAA
TTTGATTTGCGTCCGCCGCCGAAAAGGGGACGTCAGGTGCTGATCGCCAAAGTGACCCCGGGAGAACCGGTGCGCATTGG
CGGAACCGAGGTGATTCTGCGCGGCGGCGCCCGCACCGATAGCGACTACCTGGCGCTGCTGAAAACGCGCCCGGCCATCG
GGACGGTGCTCAACCACGGCGATTACGACGGCTTCAAGAGCTCGCTGACCCGCGTCGCCCTGCGCAAAGGCTACTTTGAC
AGCGAGTTTCTTAAGAGCCAGCTCGGGGTCTCCCTCGACCGTCATCAGGCGTTCTGGGATATCGATTACGACAGCGGCGA
ACGCTATCGCTTTGGCCACGTCACTTTCTCTGGCTCGCAAATCCGCGATGAATACCTGCAAAACCTCGTGCCGTTTAAAG
AGGGCGACTACTACACCTCGCAGGACCTGGCCGAGCTAAACCGCCGCCTGGCGGCGACCGGCTGGTTCAGTTCGGTGGTG
GTGGCGCCTGATTTTGCTAAGTCGCGGAAAACCAAGGTGCTGCCTCTGCAGGGCGTTGTCTCGCCTCGCAAAGAGAACAC
CGTGGAAACCGGGGTCGGCTATTCCACAGACGTCGGTCCGCGGGTGAAAGCCACGTGGAAAAAACCATGGGTCAACTCGT
ATGGCCACAGCCTGACCTCCAGCGTCAGCCTCTCCGCCCCGGAGCAGCAGTTCGACTTTACCTATAAAGTCCCACTGCTG
AAGAGCCCCCTTGAACAGTATTATCTGATGCAGGGCGGTTTTAAGCGTACCGACCTCAATGATACCCAGGCCGACTCTAC
CACCCTGGGGGTCTCGCGTTTCTGGGAGATGTCGAGCGGCTGGCAGCGAGCGATTAACCTGCGCTGGAGCCTGGATCACT
TTACCCAGGCGAACGTCACCAACACCACCATGCTGATTTATCCTGGGGTCTCGGTGAACCGCACTCGCTCCCGCGGCGGC
CTGATGCCTACCTGGGGCGATTCCCAGCGCTACTCGGTGGACTACTCCAACACCATGTGGGGCTCGGACATCAACTTCAT
CGTGATGCAGGCCCAGGACGTCTGGATCCGTACCCTCTATGACCGCCACCGCTTTGTGGTGCGCGGCAACCTTGGCTGGA
TCGAAGCGGACAACTTTGACAAGGTGCCGCCGGATCTGCGCTTTTTCGCCGGGGGCGACCGCAGTATTCGCGGCTATAAA
TACAAATCTATCTCGCCGAAGGACGATGACGGCAAGCTGATCGGGGCCTCGAAGCTGGCCACCGGCTCGCTGGAGTATCA
GTACAACGTCAGTGGTAAATGGTGGGGCGCCGTCTTTATCGATAGCGGCGAAGCGGTCAGCGATATTCGCGAGAGCGATT
TCAAAACCGGCGCCGGGGTGGGCGTGCGCTGGCAGTCGCCGGTGGGACCGATCAAGCTGGATATCGCCCGGCCGATCGGC
GACAAAGAAGAGCATGGTTTACAGTTTTACATCGGTCTGGGGCCTGAATTATGA

Upstream 100 bases:

>100_bases
TTATTGCCACTTTTTCAACCCTATGTTGTTAGGGTTTTGTTAAGCCGTGGAGCGGCGCCAGTGTTTCCTGTAGAGGAAAC
AGGGATATTCAGGAGAAAAT

Downstream 100 bases:

>100_bases
GTTTATGGAAGAAGATAAGCCTCGGCGTTTTAATCGTGTTGGTGCTCCTGCTGGGCACCGTCGGGTTCCTGGTGGGGACC
ACCACCGGCTTGCATCTGGT

Product: putative outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 577; Mature: 577

Protein sequence:

>577_residues
MLKIRQLCVTSLLLVSGVASAANVRLQVEGLSGELEKNVRAQLSTIQSDEVTPDRRFRARVDDAIREGLKALGYYEPTIE
FDLRPPPKRGRQVLIAKVTPGEPVRIGGTEVILRGGARTDSDYLALLKTRPAIGTVLNHGDYDGFKSSLTRVALRKGYFD
SEFLKSQLGVSLDRHQAFWDIDYDSGERYRFGHVTFSGSQIRDEYLQNLVPFKEGDYYTSQDLAELNRRLAATGWFSSVV
VAPDFAKSRKTKVLPLQGVVSPRKENTVETGVGYSTDVGPRVKATWKKPWVNSYGHSLTSSVSLSAPEQQFDFTYKVPLL
KSPLEQYYLMQGGFKRTDLNDTQADSTTLGVSRFWEMSSGWQRAINLRWSLDHFTQANVTNTTMLIYPGVSVNRTRSRGG
LMPTWGDSQRYSVDYSNTMWGSDINFIVMQAQDVWIRTLYDRHRFVVRGNLGWIEADNFDKVPPDLRFFAGGDRSIRGYK
YKSISPKDDDGKLIGASKLATGSLEYQYNVSGKWWGAVFIDSGEAVSDIRESDFKTGAGVGVRWQSPVGPIKLDIARPIG
DKEEHGLQFYIGLGPEL

Sequences:

>Translated_577_residues
MLKIRQLCVTSLLLVSGVASAANVRLQVEGLSGELEKNVRAQLSTIQSDEVTPDRRFRARVDDAIREGLKALGYYEPTIE
FDLRPPPKRGRQVLIAKVTPGEPVRIGGTEVILRGGARTDSDYLALLKTRPAIGTVLNHGDYDGFKSSLTRVALRKGYFD
SEFLKSQLGVSLDRHQAFWDIDYDSGERYRFGHVTFSGSQIRDEYLQNLVPFKEGDYYTSQDLAELNRRLAATGWFSSVV
VAPDFAKSRKTKVLPLQGVVSPRKENTVETGVGYSTDVGPRVKATWKKPWVNSYGHSLTSSVSLSAPEQQFDFTYKVPLL
KSPLEQYYLMQGGFKRTDLNDTQADSTTLGVSRFWEMSSGWQRAINLRWSLDHFTQANVTNTTMLIYPGVSVNRTRSRGG
LMPTWGDSQRYSVDYSNTMWGSDINFIVMQAQDVWIRTLYDRHRFVVRGNLGWIEADNFDKVPPDLRFFAGGDRSIRGYK
YKSISPKDDDGKLIGASKLATGSLEYQYNVSGKWWGAVFIDSGEAVSDIRESDFKTGAGVGVRWQSPVGPIKLDIARPIG
DKEEHGLQFYIGLGPEL
>Mature_577_residues
MLKIRQLCVTSLLLVSGVASAANVRLQVEGLSGELEKNVRAQLSTIQSDEVTPDRRFRARVDDAIREGLKALGYYEPTIE
FDLRPPPKRGRQVLIAKVTPGEPVRIGGTEVILRGGARTDSDYLALLKTRPAIGTVLNHGDYDGFKSSLTRVALRKGYFD
SEFLKSQLGVSLDRHQAFWDIDYDSGERYRFGHVTFSGSQIRDEYLQNLVPFKEGDYYTSQDLAELNRRLAATGWFSSVV
VAPDFAKSRKTKVLPLQGVVSPRKENTVETGVGYSTDVGPRVKATWKKPWVNSYGHSLTSSVSLSAPEQQFDFTYKVPLL
KSPLEQYYLMQGGFKRTDLNDTQADSTTLGVSRFWEMSSGWQRAINLRWSLDHFTQANVTNTTMLIYPGVSVNRTRSRGG
LMPTWGDSQRYSVDYSNTMWGSDINFIVMQAQDVWIRTLYDRHRFVVRGNLGWIEADNFDKVPPDLRFFAGGDRSIRGYK
YKSISPKDDDGKLIGASKLATGSLEYQYNVSGKWWGAVFIDSGEAVSDIRESDFKTGAGVGVRWQSPVGPIKLDIARPIG
DKEEHGLQFYIGLGPEL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=577, Percent_Identity=82.842287694974, Blast_Score=1005, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 64722; Mature: 64722

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKIRQLCVTSLLLVSGVASAANVRLQVEGLSGELEKNVRAQLSTIQSDEVTPDRRFRAR
CCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
VDDAIREGLKALGYYEPTIEFDLRPPPKRGRQVLIAKVTPGEPVRIGGTEVILRGGARTD
HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEECCEEEEEECCCCCC
SDYLALLKTRPAIGTVLNHGDYDGFKSSLTRVALRKGYFDSEFLKSQLGVSLDRHQAFWD
CCCEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCEEEE
IDYDSGERYRFGHVTFSGSQIRDEYLQNLVPFKEGDYYTSQDLAELNRRLAATGWFSSVV
EECCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
VAPDFAKSRKTKVLPLQGVVSPRKENTVETGVGYSTDVGPRVKATWKKPWVNSYGHSLTS
ECCCCHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCHHHHCCHHHC
SVSLSAPEQQFDFTYKVPLLKSPLEQYYLMQGGFKRTDLNDTQADSTTLGVSRFWEMSSG
CEECCCCHHHCCEEEECCHHHCHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHCCCC
WQRAINLRWSLDHFTQANVTNTTMLIYPGVSVNRTRSRGGLMPTWGDSQRYSVDYSNTMW
CEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
GSDINFIVMQAQDVWIRTLYDRHRFVVRGNLGWIEADNFDKVPPDLRFFAGGDRSIRGYK
CCCCCEEEEECCHHHHHHHHHCCEEEEECCCCEEECCCCCCCCCCCEEEECCCCCCCCEE
YKSISPKDDDGKLIGASKLATGSLEYQYNVSGKWWGAVFIDSGEAVSDIRESDFKTGAGV
ECCCCCCCCCCCEEECCCEECCCEEEEEECCCEEEEEEEEECCCHHHHHHHHCCCCCCCC
GVRWQSPVGPIKLDIARPIGDKEEHGLQFYIGLGPEL
CEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure
MLKIRQLCVTSLLLVSGVASAANVRLQVEGLSGELEKNVRAQLSTIQSDEVTPDRRFRAR
CCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
VDDAIREGLKALGYYEPTIEFDLRPPPKRGRQVLIAKVTPGEPVRIGGTEVILRGGARTD
HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEECCEEEEEECCCCCC
SDYLALLKTRPAIGTVLNHGDYDGFKSSLTRVALRKGYFDSEFLKSQLGVSLDRHQAFWD
CCCEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCEEEE
IDYDSGERYRFGHVTFSGSQIRDEYLQNLVPFKEGDYYTSQDLAELNRRLAATGWFSSVV
EECCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
VAPDFAKSRKTKVLPLQGVVSPRKENTVETGVGYSTDVGPRVKATWKKPWVNSYGHSLTS
ECCCCHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCHHHHCCHHHC
SVSLSAPEQQFDFTYKVPLLKSPLEQYYLMQGGFKRTDLNDTQADSTTLGVSRFWEMSSG
CEECCCCHHHCCEEEECCHHHCHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHCCCC
WQRAINLRWSLDHFTQANVTNTTMLIYPGVSVNRTRSRGGLMPTWGDSQRYSVDYSNTMW
CEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
GSDINFIVMQAQDVWIRTLYDRHRFVVRGNLGWIEADNFDKVPPDLRFFAGGDRSIRGYK
CCCCCEEEEECCHHHHHHHHHCCEEEEECCCCEEECCCCCCCCCCCEEEECCCCCCCCEE
YKSISPKDDDGKLIGASKLATGSLEYQYNVSGKWWGAVFIDSGEAVSDIRESDFKTGAGV
ECCCCCCCCCCCEEECCCEECCCEEEEEECCCEEEEEEEEECCCHHHHHHHHCCCCCCCC
GVRWQSPVGPIKLDIARPIGDKEEHGLQFYIGLGPEL
CEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]