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The map label for this gene is ybfI [H]

Identifier: 238892689

GI number: 238892689

Start: 475021

End: 475845

Strand: Reverse

Name: ybfI [H]

Synonym: KP1_0479

Alternate gene names: 238892689

Gene position: 475845-475021 (Counterclockwise)

Preceding gene: 238892690

Following gene: 238892688

Centisome position: 9.07

GC content: 62.67

Gene sequence:

>825_bases
ATGCAGGGCGTACCACCGCAATTTAGTGATGAAAAAGATCGCGCGCGCTTTCGCCATCTCGAACAGTTGCCCGGGGTGGA
GCTTTACCACGCCCATATTTCCCGCTACGCCTTTGAACCCCATACCCACGAAGCCTTCGGCATCGGCGTGATTGAGCAAG
GCGCGGAGCGCTTTCGCTACCGCGGCAGCCAGCATATCGCCGCCGCGAACGCTATTGTCACCATGAATCCCGACGAGCTG
CACACCGGCGAAGCGGAAACCGCCGACGGCTGGCGCTACCGGATGATTTATCTGGAGCCGGACCGTCTGGAAGCCATCAC
CGGGGTGCGCGACTGGTGGTTCAGCGAGGTGGTCCGCGAGGATCCCCTGCGTTCCCGACAGATTGGCCAGCTGATTTATG
GTCTGTGGCATAGCGACGATCCGCTGGCCCAGCAGGGAATGCTGCTCGACCTCATCGACACCTTCCGCCCTCTGGCCCAC
CATGCCTCTGCGCAAGGTGAGGCCGGGCATCGCTTCGACCGCGTGCGCGACTACCTGCACGATAACTATATGCGCCCCAT
CACCCTCGACGAGCTGGCGCAGGTGGCGGCGCTGAGCCCGTACCACTTTCAGCGCCAGTTTAAAGCCCACTATCACGTAA
CGCCCCATCAGATGCTGATGGCCATCCGTCTGTGGCGCGCCAAAGCGTTCCTCACCCACGGCATGCCCGCCGCCGAAGTG
GCGATAGCCGTCGGCCTCACCGACCAGTCCCACCTGACCCGCGCCTTCACCCAGCGTTACGGCATTACGCCGGTGCGCTA
TCAGAAGCAGGTCGCCAGGCTCTAA

Upstream 100 bases:

>100_bases
AGAGTGTAAAAGGCATTCTGTAACCGCCCCTCTCAGCTTTTGCGGTTGCGTCCCGGCGGTTCCTCTCTCATATTGAAGGG
ATAACCGTCGGGAGGCAGGC

Downstream 100 bases:

>100_bases
TGCGCAATCTCATACAATATTCCTGCCCGGCCCCCTTCTACACTGCAGACAACGGTAATGACAACGGATGCAATGATGAT
TAGTGGTGTGTTATACGCCC

Product: putative helix-turn-helix AraC-type trancriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MQGVPPQFSDEKDRARFRHLEQLPGVELYHAHISRYAFEPHTHEAFGIGVIEQGAERFRYRGSQHIAAANAIVTMNPDEL
HTGEAETADGWRYRMIYLEPDRLEAITGVRDWWFSEVVREDPLRSRQIGQLIYGLWHSDDPLAQQGMLLDLIDTFRPLAH
HASAQGEAGHRFDRVRDYLHDNYMRPITLDELAQVAALSPYHFQRQFKAHYHVTPHQMLMAIRLWRAKAFLTHGMPAAEV
AIAVGLTDQSHLTRAFTQRYGITPVRYQKQVARL

Sequences:

>Translated_274_residues
MQGVPPQFSDEKDRARFRHLEQLPGVELYHAHISRYAFEPHTHEAFGIGVIEQGAERFRYRGSQHIAAANAIVTMNPDEL
HTGEAETADGWRYRMIYLEPDRLEAITGVRDWWFSEVVREDPLRSRQIGQLIYGLWHSDDPLAQQGMLLDLIDTFRPLAH
HASAQGEAGHRFDRVRDYLHDNYMRPITLDELAQVAALSPYHFQRQFKAHYHVTPHQMLMAIRLWRAKAFLTHGMPAAEV
AIAVGLTDQSHLTRAFTQRYGITPVRYQKQVARL
>Mature_274_residues
MQGVPPQFSDEKDRARFRHLEQLPGVELYHAHISRYAFEPHTHEAFGIGVIEQGAERFRYRGSQHIAAANAIVTMNPDEL
HTGEAETADGWRYRMIYLEPDRLEAITGVRDWWFSEVVREDPLRSRQIGQLIYGLWHSDDPLAQQGMLLDLIDTFRPLAH
HASAQGEAGHRFDRVRDYLHDNYMRPITLDELAQVAALSPYHFQRQFKAHYHVTPHQMLMAIRLWRAKAFLTHGMPAAEV
AIAVGLTDQSHLTRAFTQRYGITPVRYQKQVARL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31698; Mature: 31698

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGVPPQFSDEKDRARFRHLEQLPGVELYHAHISRYAFEPHTHEAFGIGVIEQGAERFRY
CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHH
RGSQHIAAANAIVTMNPDELHTGEAETADGWRYRMIYLEPDRLEAITGVRDWWFSEVVRE
CCCCCEEECCEEEEECCHHCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHH
DPLRSRQIGQLIYGLWHSDDPLAQQGMLLDLIDTFRPLAHHASAQGEAGHRFDRVRDYLH
CCCHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
DNYMRPITLDELAQVAALSPYHFQRQFKAHYHVTPHQMLMAIRLWRAKAFLTHGMPAAEV
HCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHE
AIAVGLTDQSHLTRAFTQRYGITPVRYQKQVARL
EEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure
MQGVPPQFSDEKDRARFRHLEQLPGVELYHAHISRYAFEPHTHEAFGIGVIEQGAERFRY
CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHH
RGSQHIAAANAIVTMNPDELHTGEAETADGWRYRMIYLEPDRLEAITGVRDWWFSEVVRE
CCCCCEEECCEEEEECCHHCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHH
DPLRSRQIGQLIYGLWHSDDPLAQQGMLLDLIDTFRPLAHHASAQGEAGHRFDRVRDYLH
CCCHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
DNYMRPITLDELAQVAALSPYHFQRQFKAHYHVTPHQMLMAIRLWRAKAFLTHGMPAAEV
HCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHE
AIAVGLTDQSHLTRAFTQRYGITPVRYQKQVARL
EEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]