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The map label for this gene is psd [H]

Identifier: 238892645

GI number: 238892645

Start: 434220

End: 435182

Strand: Reverse

Name: psd [H]

Synonym: KP1_0429

Alternate gene names: 238892645

Gene position: 435182-434220 (Counterclockwise)

Preceding gene: 238892646

Following gene: 238892644

Centisome position: 8.29

GC content: 58.57

Gene sequence:

>963_bases
TTGTTAAACGATCTTAAACTTTCACTGCAATACATTCTGCCTAAACTGTGGCTCACCCGCCTCGCAGGCTGGGGTGCGAG
CAAACGCGCAGGTTGGCTGACGAAGCTGGTCATCGATCTGTTCGTGAAATACTACAAGGTCGATATGAAAGAGGCGCAGA
AGCCGGATACCGCGGCTTATCGCACCTTCAACGATTTCTTCGTGCGCCCGCTGCGCGACGACGTTCGCCCGCTGAATACC
GATCCAAACGTGCTGGTGATGCCGGCCGATGGCGTGATCAGCCAGCTTGGCGCCATTGAGAACGATAAAATCCTGCAGGC
TAAGGGTCATGACTACAGTTTGGAAGCCCTGCTGGCCGGCAACTATCAGATGGCCGACCTGTTCCGTAACGGCAGCTTCG
CCACCACCTACCTGTCGCCGCGCGACTATCACCGCGTACACATGCCGTGCAACGGCATCTTGCGCGAAATGATCTACGTT
CCTGGCGACCTGTTCTCTGTTAACCACTTGACGGCGCAGAACGTGCCGAACCTGTTCGCCCGTAACGAGCGCGTCATCTG
CCTGTTTGATACTGAGTTTGGCCCGATGGCGCAAATTCTGGTGGGCGCAACTATCGTCGGCAGCATCGAGACCGTGTGGT
CCGGCACCGTGACCCCGCCGCGCGAAGGCATTATTAAACGCTGGACCTGGCCCGCTGGCGACAACGAAGGCTCCATCGCC
TTGCTGAAAGGCCAGGAGATGGGCCGCTTCAAACTGGGTTCCACCGTGATCAACCTGTTTGCCCCGGGCCAGGTGAAGCT
GGTCGACACGCTGCAAAGCCTGTCCGTGACCAAGATCGGCCAACCGCTGGCGACAGCAGTGGAAGCGACCGCCGCCGCTG
AACCCGCTCCGTTACCGGAAGAAGAGATCCGCGCCGAACACCGCGCCAGCCCGCTGGTTGACGATAAACAAGACCAAGGT
TAA

Upstream 100 bases:

>100_bases
GATGCCATTTGGCGAGTTTTACGTATAGAATCGTCCCCTTTTTTCAGGTCCCCGCCCGCAGGCGGGGTCAGGAACGACAT
ATCATGGCCTGGAGGCTACT

Downstream 100 bases:

>100_bases
TTCTTCAGCAAAAGGGTTATGCCGTGCGCCTGATATACACTTTCCTGTTGGCCTTGAGCCTCAGTTTCGGGGCGTACGCT
GCGACAGCCCCGGATGCTAA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MLNDLKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTAAYRTFNDFFVRPLRDDVRPLNT
DPNVLVMPADGVISQLGAIENDKILQAKGHDYSLEALLAGNYQMADLFRNGSFATTYLSPRDYHRVHMPCNGILREMIYV
PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWSGTVTPPREGIIKRWTWPAGDNEGSIA
LLKGQEMGRFKLGSTVINLFAPGQVKLVDTLQSLSVTKIGQPLATAVEATAAAEPAPLPEEEIRAEHRASPLVDDKQDQG

Sequences:

>Translated_320_residues
MLNDLKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTAAYRTFNDFFVRPLRDDVRPLNT
DPNVLVMPADGVISQLGAIENDKILQAKGHDYSLEALLAGNYQMADLFRNGSFATTYLSPRDYHRVHMPCNGILREMIYV
PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWSGTVTPPREGIIKRWTWPAGDNEGSIA
LLKGQEMGRFKLGSTVINLFAPGQVKLVDTLQSLSVTKIGQPLATAVEATAAAEPAPLPEEEIRAEHRASPLVDDKQDQG
>Mature_320_residues
MLNDLKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTAAYRTFNDFFVRPLRDDVRPLNT
DPNVLVMPADGVISQLGAIENDKILQAKGHDYSLEALLAGNYQMADLFRNGSFATTYLSPRDYHRVHMPCNGILREMIYV
PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWSGTVTPPREGIIKRWTWPAGDNEGSIA
LLKGQEMGRFKLGSTVINLFAPGQVKLVDTLQSLSVTKIGQPLATAVEATAAAEPAPLPEEEIRAEHRASPLVDDKQDQG

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=281, Percent_Identity=30.6049822064057, Blast_Score=122, Evalue=4e-28,
Organism=Escherichia coli, GI1790604, Length=321, Percent_Identity=89.0965732087227, Blast_Score=598, Evalue=1e-172,
Organism=Caenorhabditis elegans, GI71980843, Length=260, Percent_Identity=32.6923076923077, Blast_Score=124, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI71980840, Length=260, Percent_Identity=32.6923076923077, Blast_Score=123, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6321609, Length=236, Percent_Identity=30.0847457627119, Blast_Score=112, Evalue=9e-26,
Organism=Saccharomyces cerevisiae, GI6324160, Length=161, Percent_Identity=36.0248447204969, Blast_Score=85, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24649526, Length=315, Percent_Identity=28.5714285714286, Blast_Score=101, Evalue=7e-22,
Organism=Drosophila melanogaster, GI24649528, Length=315, Percent_Identity=28.5714285714286, Blast_Score=101, Evalue=7e-22,
Organism=Drosophila melanogaster, GI24649524, Length=315, Percent_Identity=28.5714285714286, Blast_Score=101, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 35495; Mature: 35495

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNDLKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTAAY
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RTFNDFFVRPLRDDVRPLNTDPNVLVMPADGVISQLGAIENDKILQAKGHDYSLEALLAG
HHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHCCCCCCCEEEECCCCCEEEEEEEC
NYQMADLFRNGSFATTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFA
CCHHHHHHCCCCEEEEEECCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCHHCCCHHHH
RNERVICLFDTEFGPMAQILVGATIVGSIETVWSGTVTPPREGIIKRWTWPAGDNEGSIA
CCCEEEEEEECCCCHHHHHHHHHHHHCCHHHHHCCCCCCCHHCHHEECCCCCCCCCCCEE
LLKGQEMGRFKLGSTVINLFAPGQVKLVDTLQSLSVTKIGQPLATAVEATAAAEPAPLPE
EEECCCCCCEECCCHHEEEECCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCH
EEIRAEHRASPLVDDKQDQG
HHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLNDLKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTAAY
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RTFNDFFVRPLRDDVRPLNTDPNVLVMPADGVISQLGAIENDKILQAKGHDYSLEALLAG
HHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHCCCCCCCEEEECCCCCEEEEEEEC
NYQMADLFRNGSFATTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFA
CCHHHHHHCCCCEEEEEECCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCHHCCCHHHH
RNERVICLFDTEFGPMAQILVGATIVGSIETVWSGTVTPPREGIIKRWTWPAGDNEGSIA
CCCEEEEEEECCCCHHHHHHHHHHHHCCHHHHHCCCCCCCHHCHHEECCCCCCCCCCCEE
LLKGQEMGRFKLGSTVINLFAPGQVKLVDTLQSLSVTKIGQPLATAVEATAAAEPAPLPE
EEECCCCCCEECCCHHEEEECCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCH
EEIRAEHRASPLVDDKQDQG
HHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA